PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00345g00027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ARF | ||||||||
Protein Properties | Length: 703aa MW: 78392.3 Da PI: 7.1219 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.1 | 3.5e-23 | 129 | 229 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+k+lt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD Peaxi162Scf00345g00027.1 129 FCKILTASDTSTHGGFSVLRKHANEClpqldmtQ--ATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGD 211 99**************************999543..445568******************************************* PP EEEEEE-SSSEE..EEEEE- CS B3 79 fvvFkldgrsefelvvkvfr 98 +vF + +++el+v+v+r Peaxi162Scf00345g00027.1 212 AFVFL--RGDNGELRVGVRR 229 *****..3489999****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.26E-39 | 121 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-39 | 121 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.21E-20 | 128 | 229 | No hit | No description |
SMART | SM01019 | 1.3E-20 | 129 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.041 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-21 | 129 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-31 | 255 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.1E-6 | 577 | 624 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 4.91E-13 | 585 | 664 | No hit | No description |
PROSITE profile | PS51745 | 26.938 | 588 | 680 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.3E-7 | 634 | 678 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MSYDNCEAFQ LAYKTKKGMG SDDLYTELWK ACAGPLVDVP RAGERAYYFP QGHIEQLEAS 60 TNQALNQQIP QFNLPSKILC RVVHVQLRAE TETDEVYAQI TLHPEAEQEE PSSPDPCPPD 120 QPKQSVQSFC KILTASDTST HGGFSVLRKH ANECLPQLDM TQATPTQDLV AKDLHGYEWR 180 FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRGDN GELRVGVRRL ARQQSAMPQS 240 VISSQSMHLG VLATASHAIT TQTRFVVYYK PRTSQFIIGL NKYLEAVSHG FSVGMRFRMR 300 FEGEDSPERR FTGTIVGAGD ISSQWSESKW RSLKIQWDEQ ASILRPDRVS PWEIEPFVAP 360 TSVDVAQPGI KSKRPRPLEL PHTETAAASA ASSFWFPGSG PTLKVSHLGS IAEVQSHDNQ 420 LFWSSKQNSS LSNGMSNISC RTHLSGAWQH NMLANGSVNL FRDSVEDNKQ LTARSAILDY 480 GSPMSSRASN GLLLEQVVRG NKREISSACR LFGIDLRTNS NNATTREKEM LGPNVTSNCT 540 DNAPTGPDSS EVDKDRSVEH LNPSEEKKQV QLEALAKDTH RQGLTSSRTR TKVQMQGVRV 600 GRAVDLTALS GYNDLISELE KIFDIKGELC PRNKWEVVYT DDEGDMMLVG DDPWPEFCKM 660 VRRIFIYSSE EVKKMSPRCK LPILSLEGEG TMPSVDSGLK SEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-172 | 18 | 357 | 13 | 355 | Auxin response factor 1 |
4ldw_A | 1e-172 | 18 | 357 | 13 | 355 | Auxin response factor 1 |
4ldw_B | 1e-172 | 18 | 357 | 13 | 355 | Auxin response factor 1 |
4ldx_A | 1e-172 | 18 | 357 | 13 | 355 | Auxin response factor 1 |
4ldx_B | 1e-172 | 18 | 357 | 13 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 372 | 376 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233120 | 1e-120 | AC233120.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-101i8 map 1, complete sequence. | |||
GenBank | HG975440 | 1e-120 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 1e-120 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339725.1 | 0.0 | PREDICTED: auxin response factor 18 isoform X3 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
TrEMBL | A0A0V0ISA1 | 0.0 | A0A0V0ISA1_SOLCH; Auxin response factor | ||||
STRING | PGSC0003DMT400000345 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2347 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |
Publications ? help Back to Top | |||
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