PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00340g00812.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRF
Protein Properties Length: 541aa    MW: 58485.9 Da    PI: 8.5423
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00340g00812.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC64.41.7e-20162199845
                       WRC   8 rRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                               rRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Peaxi162Scf00340g00812.1 162 RRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 199
                               6**********************************985 PP
2QLQ63.26.8e-2289125137
                       QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                               ++FT++Q+++L++Q+l+yKy++an+P+Pp+Ll +i+k
  Peaxi162Scf00340g00812.1  89 GPFTPSQWMELEHQALIYKYIVANVPIPPYLLNPIRK 125
                               59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-1289125IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.8190125IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.4E-1690124IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166721.028155199IPR014977WRC domain
PfamPF088791.7E-17162198IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MDFGLDSGGG VICSDNSNMF TSVETKQKLY GSVGLYKHER STEDEYSWNN KDNKLAKISP  60
LLMRSVNDSC GSGGMNAGNM HGVIAGIKGP FTPSQWMELE HQALIYKYIV ANVPIPPYLL  120
NPIRKALESA GFSTFAGLRP NAFGWGAFHL GFSNSNDPEP GRRTDGKKWR CSRDAVADQK  180
YCERHMNRGR HRSRKPVEGQ TGNSASGNTS ATSAKLMNIS SSASAALAPG GAASNTLGLS  240
HNHQLSNLQP AGTNPSTTST FLERSYTAKE NFGERYSDTK GPTIVSPSVK ESQYSTQKEH  300
NLYGETSRAE FGLVCADSLI NPLNKNSSLV NCRGYGNSGS ISDQERKSQH HPLRQFMDDW  360
PKNQSDQSNV SWPKIDLQSD RTQLSISIPV VTSDFMSSTS SPVNDKLTAS PHRLSREHEA  420
TQMGLGIGTI VSEHNQRQGS WIPITWESSM GGPLGEVLHS TNSSSSDCKN KSALNLMTEG  480
WDRSPRMLSS PTGVLQKASF GSLSNSSAGS SPRAENSKTM NEGSSLCNGL GTILMNPTPP  540
A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311867.10.0growth-regulating factor 1-like
TrEMBLA0A2G3CPI70.0A0A2G3CPI7_CAPCH; Uncharacterized protein
STRINGSolyc04g077510.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.15e-85growth-regulating factor 1