PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00299g10019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 149aa    MW: 16498.8 Da    PI: 4.6294
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00299g10019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS142.73.7e-44214813179
                      GRAS  13 ssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                               +sg+le+a+ +L  +s+laspdgd+mqR+a+y+teALa r++rs+++lyk l++++ s   +se              + +++++
  Peaxi162Scf00299g10019.1   2 ASGSLENANIAL-DISHLASPDGDTMQRIASYLTEALADRILRSWPGLYKVLQSTKLS--VVSED-------------ILVAFMV 70 
                               577888888777.69***********************************99988887..24444.............44689** PP

                      GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                               +NqaI ea+ege++vHi+D+++ ++lQW aLlq L++Rpegpp+lRiTg ++    +ke l ++++ L++ A++l+ pf+fn
  Peaxi162Scf00299g10019.1  71 TNQAIIEAMEGEKMVHIVDLNAAEPLQWRALLQNLSARPEGPPHLRITGAHQ----QKEVLDHMAHVLTEEAANLDFPFQFN 148
                               ****************************************************....9************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.2181149IPR005202Transcription factor GRAS
PfamPF035141.3E-412148IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MASGSLENAN IALDISHLAS PDGDTMQRIA SYLTEALADR ILRSWPGLYK VLQSTKLSVV  60
SEDILVAFMV TNQAIIEAME GEKMVHIVDL NAAEPLQWRA LLQNLSARPE GPPHLRITGA  120
HQQKEVLDHM AHVLTEEAAN LDFPFQFNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-27114730192Protein SCARECROW
5b3h_A1e-26114729191Protein SCARECROW
5b3h_D1e-26114729191Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754516e-89HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755246e-89HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252879.13e-85scarecrow-like protein 3
RefseqXP_015061792.14e-85scarecrow-like protein 3
SwissprotQ9LPR82e-66SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A3Q7JDZ17e-84A0A3Q7JDZ1_SOLLC; Uncharacterized protein
STRINGSolyc12g099900.1.11e-84(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1604136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.18e-69scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]