PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00299g00345.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 335aa MW: 37596.1 Da PI: 6.2502 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.2 | 5.1e-12 | 167 | 214 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L l+P + kK++Ka++L A++++k+Lq Peaxi162Scf00299g00345.1 167 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKHLKQLQ 214 6799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.447 | 164 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-9 | 167 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-16 | 168 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-16 | 169 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.71E-12 | 169 | 218 | No hit | No description |
SMART | SM00353 | 2.8E-14 | 170 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
EMEYHGFNQQ WPISSFDELS AISSIAASFG ENNYLHESSP FISQPIVGLK RPAADDQLSQ 60 IVEQRPLKNH KTSPSWNNYE NNHILSSSQS AASPNYHLIN SNGYTNQYVN VKPKEESTTM 120 SSSSITYAAD QMVSQDSFAN QNYMFKANFQ GANKNVISTN GKLTQAQDHI IAERKRREKL 180 SQRFIALSAL IPGLKKMDKA SVLGDAIKHL KQLQERVKTL EEQTRKKPVE SVVFVKKYEL 240 YGDGENSSSD ENFSSGTLQV DEPLPEIEAR ISERNVLVRI HCEKRKGIVD KTVAEIEKLH 300 LSVINSCALS FGNSALDMTI IAQMDEEFAM TVQDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-12 | 168 | 217 | 8 | 57 | Transcription factor MYC2 |
5gnj_B | 1e-12 | 168 | 217 | 8 | 57 | Transcription factor MYC2 |
5gnj_E | 1e-12 | 168 | 217 | 8 | 57 | Transcription factor MYC2 |
5gnj_F | 1e-12 | 168 | 217 | 8 | 57 | Transcription factor MYC2 |
5gnj_G | 1e-12 | 168 | 217 | 8 | 57 | Transcription factor MYC2 |
5gnj_I | 1e-12 | 168 | 217 | 8 | 57 | Transcription factor MYC2 |
5gnj_M | 1e-12 | 168 | 217 | 8 | 57 | Transcription factor MYC2 |
5gnj_N | 1e-12 | 168 | 217 | 8 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 177 | ERKRRE |
2 | 173 | 178 | RKRREK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-121 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019232955.1 | 0.0 | PREDICTED: transcription factor bHLH25-like | ||||
Swissprot | Q9T072 | 2e-58 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A1J6KYH2 | 0.0 | A0A1J6KYH2_NICAT; Transcription factor bhlh25 | ||||
STRING | XP_009779237.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1760 | 24 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-60 | bHLH family protein |