PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00259g00710.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HSF
Protein Properties Length: 369aa    MW: 42098.4 Da    PI: 5.2415
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00259g00710.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.48.6e-37491412103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+ye+++d ++++++sw++ g+sfvv+d++ f++++LpkyFkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F
  Peaxi162Scf00259g00710.1  49 FLTKTYEMVDDTSTDHVVSWNRGGQSFVVWDPHAFSTSLLPKYFKHNNFSSFVRQLNTYGFRKIDPER---------WEFANEAF 124
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                kg+k+ll++i+r+k++
  Peaxi162Scf00259g00710.1 125 LKGNKQLLRNIRRRKTS 141
                               **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.36E-3545138IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-3945138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-6045138IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3249138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-204972IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-208799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-20100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MNLLYPVKEE YPGGSSSSAG GGDRGGEPPP PVMTPQPMEG LHDIGPPPFL TKTYEMVDDT  60
STDHVVSWNR GGQSFVVWDP HAFSTSLLPK YFKHNNFSSF VRQLNTYGFR KIDPERWEFA  120
NEAFLKGNKQ LLRNIRRRKT SNSQLTPTEQ ALGPCVELGR FGFDGEVDRL RRDKQVLMME  180
LVKLRQQQQN TRAYLRSLEL RVQGTERKQQ QMMNFLARAM QNPEFVQQLI QQKEKRKQLE  240
EAITKKRRRP IDQGPSTLGV GGSSHPIKSE PLEFGDRCGF QVSELEALAL EMQGFGRARM  300
DHQDETTEGL AQFGNTDKEL DEGFWEELFN DEGDEEVTSE VCKEESRKAA IWINQLIFDC  360
CLDGEAVIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-264714318125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234248KRKQLEEAITKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2679990.0KF267999.1 Capsicum annuum heat stress transcription factor A-6b (HSFA6B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247837.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X1
RefseqXP_019247842.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X1
RefseqXP_019247848.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X1
RefseqXP_019247856.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X1
RefseqXP_019247866.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X1
RefseqXP_019247872.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X1
RefseqXP_019247879.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X1
RefseqXP_019247885.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X1
RefseqXP_019247894.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X2
RefseqXP_019247901.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X2
SwissprotQ9LUH81e-121HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1J6JMM20.0A0A1J6JMM2_NICAT; Heat stress transcription factor a-6b
STRINGXP_009631618.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-119heat shock transcription factor A6B