PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00259g00513.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 436aa    MW: 48390.6 Da    PI: 8.6338
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00259g00513.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94e-061941123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C++Cgk F r  nL+ H r H
  Peaxi162Scf00259g00513.1 19 FVCEICGKGFQRDQNLQLHRRGH 41
                              89*******************88 PP
2zf-C2H211.80.0007695117123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC +C+k +  +s+ k H +t+
  Peaxi162Scf00259g00513.1  95 WKCDKCSKIYAVQSDWKAHSKTC 117
                               58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.43E-71841No hitNo description
SMARTSM003550.0121941IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6141941IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-51941IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.3E-483116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.43E-790115No hitNo description
SMARTSM0035518095115IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
PDAEVIALSP KTLLATNRFV CEICGKGFQR DQNLQLHRRG HNLPWKLKQR NNKENRKKAY  60
VCPEPTCIHH HPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKIYAVQSDW KAHSKTCGTR  120
EYRCDCGTLF SRFVMSYGTI LPLTLLCYCN ALCRKDSFVT HRAFCDALAE ESARLSANSS  180
LMHRAAASTV SNSSAEPSFH LNQSPSFIPF PTTQRHFANP PPPPTTHISL NQWDPQIPLN  240
DNPNPIIHPV PIIKTEPIHI PINSSSLPFY QTDSVFHSHS SFSIPSPQLS ATALLQKAVT  300
IGTVSHVNST MAHLNRTSLG HHVSVPLPKL SPDDYLGFGS ENMSSHWQKN ENLTRDFLGL  360
TGDHHDHDHE CSGGGRSVMA NGSGRNGGMV SYGNGNMEFQ KTLYERDNSV LLKHHPLGFG  420
FGAAAETSAS ETWGNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3091177367Zinc finger protein JACKDAW
5b3h_F1e-3091177367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14557KLKQRNNKENRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-126HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-126HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786203.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_016477693.10.0PREDICTED: protein indeterminate-domain 2-like
TrEMBLA0A1S4AMN40.0A0A1S4AMN4_TOBAC; protein indeterminate-domain 2-like
TrEMBLA0A1U7X5S40.0A0A1U7X5S4_NICSY; zinc finger protein NUTCRACKER-like
STRINGXP_009786203.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-98C2H2 family protein