PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00236g00024.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bHLH

Protein Properties

Length: 330aa MW: 36645.5 Da PI: 7.9342

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00236g00024.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44	4e-14	109	160	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ Peaxi162Scf00236g00024.1 109 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 160 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.1E-13	107	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.12E-12	107	164	No hit	No description
SuperFamily	SSF47459	1.16E-16	107	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.294	108	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-11	109	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-10	114	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MALEALSTNE LLNFIIYDTI TATPFNTNNN NLEPTSATLL LDHHENSLLK PQTFSGSLEN 60 CSSMMLAQQQ LTETTSRREK NLAVAQGGGR KKRRRRPKVC KNKEEAENQR MTHIAVERNR 120 RKQMNEHLAV LRSLMPESYV QRGDQASIVG GAIEFVKELE HILQSLEAQK FLLLQQGGGG 180 DGEGCPNKTT ATGGTFSSSG GATEFFPTTP FAQFFSYPQY TCSQLPNKYT SKSKAAIADI 240 EVTLIETHAN VRILSRKRFR QLSKLVAAFQ SLYLSVLHLN VTTLDPLVLY SISAKVEEGC 300 QLNSADDIAG AVHHMLRIIE EETATFSYQA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	95	RKKRRRR
2	90	95	KKRRRR
3	109	120	RMTHIAVERNRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ261233	1e-101	GQ261233.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI018 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018622054.1	1e-173	PREDICTED: transcription factor bHLH71 isoform X1
Swissprot	Q56XR0	4e-77	BH071_ARATH; Transcription factor bHLH71
TrEMBL	A0A1S4ANW9	1e-172	A0A1S4ANW9_TOBAC; transcription factor bHLH71-like
STRING	XP_009631535.1	1e-173	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5632	24	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46690.1	2e-76	beta HLH protein 71

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]