PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00222g00117.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family WRKY
Protein Properties Length: 502aa    MW: 54988.4 Da    PI: 7.6193
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00222g00117.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1079.5e-34227283259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               dDgynWrKYGqK+v+gse+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Peaxi162Scf00222g00117.1 227 DDGYNWRKYGQKQVRGSEYPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 283
                               8****************************************.***************8 PP
2WRKY105.23.4e-33389447159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+H h+
  Peaxi162Scf00222g00117.1 389 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHSHD 447
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-30220285IPR003657WRKY domain
PROSITE profilePS5081123.801221285IPR003657WRKY domain
SuperFamilySSF1182902.75E-26224285IPR003657WRKY domain
SMARTSM007742.3E-37226284IPR003657WRKY domain
PfamPF031061.7E-25227283IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-37374449IPR003657WRKY domain
SuperFamilySSF1182901.44E-29381449IPR003657WRKY domain
PROSITE profilePS5081138.618384449IPR003657WRKY domain
SMARTSM007742.2E-39389448IPR003657WRKY domain
PfamPF031066.5E-26390447IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MAENEGSSSS SSRTPLLRPT ITLPSRNSIE TLFTGALSSG ISPGPMTLVS SFFNDNDPDS  60
DCRSFSQLLA GAMSSPAGFP PPSTAGNDSG EFRFKENRPT GLVISTQSSN TFTVPPGLSP  120
ASLFDSPGFF SPGQGPFGMS HQQVLAQLTA QAGQPQSRMH IQPHYPSSSA PPAPSLSQFQ  180
SFTSNVAVNQ PRAPPASDPT IVRESSDISL SDQRSEPASI AVDKPADDGY NWRKYGQKQV  240
RGSEYPRSYY KCTHPNCPVK KKVERSLDGQ VTEIIYKGQH NHQPPQSSKR SKDNGNPNGN  300
YNLQGPYESK EGEPSYSLSM KDQESSQISG SSDSEEVGDA ETRVDGRDSD ERESKRRAVE  360
VQTSEAACSH RTVTEPRIIV QTTSEVDLLD DGYRWRKYGQ KVVKGNPYPR SYYKCTSQGC  420
NVRKHVERAA SDPKAVITTY EGKHSHDVPA ARNSSHNTAS NSMSQLRQHN SVVDKPTAMR  480
RTDFQNNEQP IALLRFKEEQ IT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-41227450878Probable WRKY transcription factor 4
2lex_A2e-41227450878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794188.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-168WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A1U7XTB80.0A0A1U7XTB8_NICSY; probable WRKY transcription factor 4
STRINGXP_009794188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-144WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]