PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00160g01740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family WRKY
Protein Properties Length: 182aa    MW: 21249.8 Da    PI: 8.1871
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00160g01740.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.13.6e-28107165159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYG+K+vk++++ r+YY+C+s gC+vkkkver+ +d +++++tYeg+Hnhe
  Peaxi162Scf00160g01740.1 107 LDDGYKWRKYGKKKVKSNTNLRNYYKCSSGGCKVKKKVERDGNDSSYLITTYEGRHNHE 165
                               59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-2993166IPR003657WRKY domain
SuperFamilySSF1182903.14E-25100166IPR003657WRKY domain
PROSITE profilePS5081127.577102167IPR003657WRKY domain
SMARTSM007744.1E-30107166IPR003657WRKY domain
PfamPF031063.6E-22108165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSSTFIETSI SQIGNPSFTT PFLYSHMIID EDYGYNFNDF QDFESSFLDQ LLVDYSPTNH  60
IMQEISSTTP PNIYLKEKSK VGIKKDKIMN ERHDAIAFRT KTRLEILDDG YKWRKYGKKK  120
VKSNTNLRNY YKCSSGGCKV KKKVERDGND SSYLITTYEG RHNHESSSFI YNHEMPSDQF  180
PQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-2396165372WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4604752e-74DQ460475.1 Nicotiana tabacum cultivar Samsun NN putative WRKY transcription factor (WRKY12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763636.14e-85PREDICTED: probable WRKY transcription factor 51
RefseqXP_016482352.14e-85PREDICTED: probable WRKY transcription factor 51
TrEMBLA0A1S4B0889e-84A0A1S4B088_TOBAC; probable WRKY transcription factor 51
TrEMBLA0A1U7VFG79e-84A0A1U7VFG7_NICSY; probable WRKY transcription factor 51
STRINGXP_009763636.11e-84(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA141921013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-18WRKY DNA-binding protein 51