PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00160g01740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | WRKY | ||||||||
Protein Properties | Length: 182aa MW: 21249.8 Da PI: 8.1871 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.1 | 3.6e-28 | 107 | 165 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk++++ r+YY+C+s gC+vkkkver+ +d +++++tYeg+Hnhe Peaxi162Scf00160g01740.1 107 LDDGYKWRKYGKKKVKSNTNLRNYYKCSSGGCKVKKKVERDGNDSSYLITTYEGRHNHE 165 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-29 | 93 | 166 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-25 | 100 | 166 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.577 | 102 | 167 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-30 | 107 | 166 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-22 | 108 | 165 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MSSTFIETSI SQIGNPSFTT PFLYSHMIID EDYGYNFNDF QDFESSFLDQ LLVDYSPTNH 60 IMQEISSTTP PNIYLKEKSK VGIKKDKIMN ERHDAIAFRT KTRLEILDDG YKWRKYGKKK 120 VKSNTNLRNY YKCSSGGCKV KKKVERDGND SSYLITTYEG RHNHESSSFI YNHEMPSDQF 180 PQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-23 | 96 | 165 | 3 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ460475 | 2e-74 | DQ460475.1 Nicotiana tabacum cultivar Samsun NN putative WRKY transcription factor (WRKY12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009763636.1 | 4e-85 | PREDICTED: probable WRKY transcription factor 51 | ||||
Refseq | XP_016482352.1 | 4e-85 | PREDICTED: probable WRKY transcription factor 51 | ||||
TrEMBL | A0A1S4B088 | 9e-84 | A0A1S4B088_TOBAC; probable WRKY transcription factor 51 | ||||
TrEMBL | A0A1U7VFG7 | 9e-84 | A0A1U7VFG7_NICSY; probable WRKY transcription factor 51 | ||||
STRING | XP_009763636.1 | 1e-84 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14192 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 2e-18 | WRKY DNA-binding protein 51 |