PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00148g00123.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 252aa MW: 29263.9 Da PI: 6.7057 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 31.6 | 5.4e-10 | 54 | 107 | 47 | 90 |
FAR1 47 k...........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + +e++ r+r e r+gCka++k k + +g wev ++ eHnH++ Peaxi162Scf00148g00123.1 54 AvakgqsplcsnSEERIRQRLEYRCGCKARIKFKIS-NGMWEVFEFCDEHNHPMI 107 244455555555688999****************99.***************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-7 | 51 | 107 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MELSLAAYKT PSNEDNNNNN NINGQEYDKS VHTLKIGMKF SSEDESHEAY NSHAVAKGQS 60 PLCSNSEERI RQRLEYRCGC KARIKFKISN GMWEVFEFCD EHNHPMIEKK LRHFIPSGRK 120 LTDATKNILS SMVDAGIRTK KAVRYLQNEA GGIENAGFIE QDAHNFIQAR KRNMIDSGDC 180 QTLVNRFMDM QSEDPNFFYF FQVDEDGRMC NFFWRDSISK LHYECFGDVM IFDTTYRTNR 240 YDMICAPFVG VK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019261901.1 | 3e-95 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | K4BG86 | 1e-114 | K4BG86_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g044690.1.1 | 1e-115 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1726 | 9 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-35 | FAR1-related sequence 5 |