PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00146g00719.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family G2-like
Protein Properties Length: 415aa    MW: 46498.9 Da    PI: 7.5369
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00146g00719.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.41.5e-334498155
                   G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                              kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl
  Peaxi162Scf00146g00719.1 44 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 98
                              79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3841101IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-314299IPR009057Homeodomain-like
SuperFamilySSF466898.96E-174399IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-244499IPR006447Myb domain, plants
PfamPF002492.5E-104697IPR001005SANT/Myb domain
PfamPF143795.9E-23144191IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MYHHQHQNKS MHLSTRMSIP ERHMLLQGGN GNGDSGLVLS TDAKPRLKWT PDLHERFIEA  60
VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANASG ANKTVAAAEV  120
DRISENSATF MSNPSIGTQP NKNIHISEAI QMQIEVQRRL HEQLEVQRHL QLKIEGQGKY  180
LQAVLEKAQE TLGRQNMGTV GLESAKVQLS ELVSKVSNQC LNSAYPHIEE LSGFHSRQTQ  240
ATQPADCSID SCLTSGEGTL RDNTIHNNQI GLRPFDFTPS IESKDIENIT RLQQTELRWC  300
DNLKENRNLF SAIHESRDNA YTAETNYKNL SMSIGLQEGK LNGSSNHSDG KFNGTDTDVK  360
HYQAANRNNS MTERKKSLED YKLSYFAPKL DLNMHDETDA ASSCKQFDLN GFSWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-2243100158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-2243100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-2243100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-2243100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-2243100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-2243100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-2243100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-2243100158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018634548.10.0PREDICTED: myb-related protein 2-like isoform X1
RefseqXP_018634549.10.0PREDICTED: myb-related protein 2-like isoform X1
SwissprotQ9SQQ91e-133PHL9_ARATH; Myb-related protein 2
TrEMBLA0A1S3XAE50.0A0A1S3XAE5_TOBAC; uncharacterized protein LOC107763009 isoform X1
STRINGXP_009630167.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29462451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-135G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]