PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00102g01519.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | NF-YC | ||||||||
Protein Properties | Length: 108aa MW: 11916.1 Da PI: 10.2504 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 96.3 | 2.5e-30 | 22 | 96 | 19 | 91 |
NF-YC 19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi.fdf 91 h+lPlarikki+k + +dvkmis eaP+++skacelfi elt r+w+ + + krrtl+k d+a+av td+ f f Peaxi162Scf00102g01519.1 22 HSLPLARIKKIMKkSSDDVKMISGEAPIVFSKACELFIEELTKRAWIMTMQGKRRTLHKEDVASAVIATDKlFHF 96 99**********825689*********************************************999887642665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.44E-25 | 17 | 91 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.6E-32 | 18 | 87 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-22 | 23 | 87 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MRQAGAYSGL LSGGISGKTG PHSLPLARIK KIMKKSSDDV KMISGEAPIV FSKACELFIE 60 ELTKRAWIMT MQGKRRTLHK EDVASAVIAT DKLFHFELVS LGILREEI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-27 | 22 | 96 | 16 | 88 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019237199.1 | 1e-58 | PREDICTED: nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q9ZVL3 | 2e-27 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A1J6JZQ0 | 3e-57 | A0A1J6JZQ0_NICAT; Nuclear transcription factor y subunit c-9 | ||||
STRING | XP_009628926.1 | 8e-57 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12881 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 9e-30 | nuclear factor Y, subunit C3 |