PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00102g00086.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family Trihelix
Protein Properties Length: 389aa    MW: 43614 Da    PI: 9.3284
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00102g00086.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.95.3e-1833123186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                               +Wt++e laLiea+re++ +lrrg l+ ++W++v++++     +    +++ qC++k+e+l++ry+++k+++  + + +  s++ 
  Peaxi162Scf00102g00086.1  33 CWTQEEALALIEAYRERWYALRRGYLRTADWDAVAAAVtsrcPDASPPKTSAQCRHKMEKLRQRYRAEKQRSLVNpNGRFFSSWF 117
                               8************************************97776677778999******************9987764566778999 PP

                  trihelix  81 yfdqle 86 
                               ++d+++
  Peaxi162Scf00102g00086.1 118 FYDNMD 123
                               999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-1932125No hitNo description
PROSITE profilePS500906.6443494IPR017877Myb-like domain
SMARTSM005955.2E-1041130IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MTSPNIDTTT TTAVTETTTA APSPPVRRFP PPCWTQEEAL ALIEAYRERW YALRRGYLRT  60
ADWDAVAAAV TSRCPDASPP KTSAQCRHKM EKLRQRYRAE KQRSLVNPNG RFFSSWFFYD  120
NMDAMENNTT VSAIRSNYQI NEQPSGGGDG YAMKTIIDHN LLKLKINNVP KDDIRSHTNL  180
MLNNHGVVGR NADKSNYGSR IPNGYSPYMA MGYEQPHDGE FGSSVRMKAK RFNGSSNNAG  240
FDCDEGSEYN GSGNGNGSDG FHHLRNMMGG VSSSRRTSYG GGNVEMNNDS RFSSPGVSRL  300
GKKGVKRGRV DPMEEMVLSI KLLGEGFMKM EKMKMEMAQE VEQMRMEMEM KRNEVILESQ  360
KQLVEAFVKV LSEVNKNNKN VKTVSPDES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755202e-66HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362480.11e-146PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A0V0IKW11e-146A0A0V0IKW1_SOLCH; Putative trihelix transcription factor ASIL2-like
STRINGPGSC0003DMT4000528361e-146(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127741617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-29Trihelix family protein