PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00102g00086.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | Trihelix | ||||||||
Protein Properties | Length: 389aa MW: 43614 Da PI: 9.3284 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 56.9 | 5.3e-18 | 33 | 123 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt++e laLiea+re++ +lrrg l+ ++W++v++++ + +++ qC++k+e+l++ry+++k+++ + + + s++ Peaxi162Scf00102g00086.1 33 CWTQEEALALIEAYRERWYALRRGYLRTADWDAVAAAVtsrcPDASPPKTSAQCRHKMEKLRQRYRAEKQRSLVNpNGRFFSSWF 117 8************************************97776677778999******************9987764566778999 PP trihelix 81 yfdqle 86 ++d+++ Peaxi162Scf00102g00086.1 118 FYDNMD 123 999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.4E-19 | 32 | 125 | No hit | No description |
PROSITE profile | PS50090 | 6.644 | 34 | 94 | IPR017877 | Myb-like domain |
SMART | SM00595 | 5.2E-10 | 41 | 130 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MTSPNIDTTT TTAVTETTTA APSPPVRRFP PPCWTQEEAL ALIEAYRERW YALRRGYLRT 60 ADWDAVAAAV TSRCPDASPP KTSAQCRHKM EKLRQRYRAE KQRSLVNPNG RFFSSWFFYD 120 NMDAMENNTT VSAIRSNYQI NEQPSGGGDG YAMKTIIDHN LLKLKINNVP KDDIRSHTNL 180 MLNNHGVVGR NADKSNYGSR IPNGYSPYMA MGYEQPHDGE FGSSVRMKAK RFNGSSNNAG 240 FDCDEGSEYN GSGNGNGSDG FHHLRNMMGG VSSSRRTSYG GGNVEMNNDS RFSSPGVSRL 300 GKKGVKRGRV DPMEEMVLSI KLLGEGFMKM EKMKMEMAQE VEQMRMEMEM KRNEVILESQ 360 KQLVEAFVKV LSEVNKNNKN VKTVSPDES |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 2e-66 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362480.1 | 1e-146 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A0V0IKW1 | 1e-146 | A0A0V0IKW1_SOLCH; Putative trihelix transcription factor ASIL2-like | ||||
STRING | PGSC0003DMT400052836 | 1e-146 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12774 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 3e-29 | Trihelix family protein |