PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00097g01013.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family WRKY
Protein Properties Length: 824aa    MW: 90939 Da    PI: 7.4555
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00097g01013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.92.2e-33165221259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpv+kkvers  d++v+ei+Y+g+Hnh+
  Peaxi162Scf00097g01013.1 165 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVTKKVERSL-DGQVTEIIYKGQHNHQ 221
                               8****************************************.***************8 PP
2WRKY105.52.7e-33331389159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  Peaxi162Scf00097g01013.1 331 LDDGYKWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHNHD 389
                               59********************************************************7 PP
3WRKY105.92.2e-33546602259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpv+kkvers  d++v+ei+Y+g+Hnh+
  Peaxi162Scf00097g01013.1 546 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVTKKVERSL-DGQVTEIIYKGQHNHQ 602
                               8****************************************.***************8 PP
4WRKY105.52.7e-33712770159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  Peaxi162Scf00097g01013.1 712 LDDGYKWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHNHD 770
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-30158223IPR003657WRKY domain
PROSITE profilePS5081123.571159223IPR003657WRKY domain
SuperFamilySSF1182903.27E-26162223IPR003657WRKY domain
SMARTSM007743.3E-38164222IPR003657WRKY domain
PfamPF031061.1E-25165221IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-37317391IPR003657WRKY domain
SuperFamilySSF1182901.44E-29323391IPR003657WRKY domain
PROSITE profilePS5081138.962326391IPR003657WRKY domain
SMARTSM007748.2E-40331390IPR003657WRKY domain
PfamPF031067.6E-26332389IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.1E-30539604IPR003657WRKY domain
PROSITE profilePS5081123.571540604IPR003657WRKY domain
SuperFamilySSF1182903.27E-26543604IPR003657WRKY domain
SMARTSM007743.3E-38545603IPR003657WRKY domain
PfamPF031061.1E-25546602IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-37698772IPR003657WRKY domain
SuperFamilySSF1182901.44E-29704772IPR003657WRKY domain
PROSITE profilePS5081138.962707772IPR003657WRKY domain
SMARTSM007748.2E-40712771IPR003657WRKY domain
PfamPF031067.6E-26713770IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MAENQPSSSS TSAPMRPTIT LPPRASMESL FMGGPGGVSP GPMTLVSNFF SNPDSDYPSF  60
SQLLADGFWT VKGPFGMSHQ QALAQVTAQA AQPQSLLHIQ PDYPSTSAAP APSDSQFQSL  120
TSNATTNQHM PAPASDPNVM KEASEVSLSD QRSEPASIAV DKPADDGYNW RKYGQKQVKG  180
SEYPRSYYKC THPNCPVTKK VERSLDGQVT EIIYKGQHNH QPPQHSKRSK ESGNPNGTYN  240
LQGPSGLSQA YVPSYSLTMK DQESSQATHD QISELNEGEE VGDAENIADG NDERESKRRA  300
IEVQTSDAAS SHRTVAEPRI IVQTTSEVDL LDDGYKWRKY GQKVVKGNPY PRSYYKCTSQ  360
GCNVRKHVER AASDPKAVIT TYEGKHNHDV PAARNSSHNT TNNSVPQLRP HNPVVAKQDA  420
TRRTVLRNNE QQPIALLRFK EEQLLTDGFW TVKGPFGMSH QQALAQVTAQ AAQPQSLLHI  480
QPDYPSTSAA PAPSDSQFQS LTSNATTNQH MPAPASDPNV MKEASEVSLS DQRSEPASIA  540
VDKPADDGYN WRKYGQKQVK GSEYPRSYYK CTHPNCPVTK KVERSLDGQV TEIIYKGQHN  600
HQPPQHSKRS KESGNPNGTY NLQGPSGLSQ AYVPSYSLTM KDQESSQATH DQISELNEGE  660
EVGDAENIAD GNDERESKRR AIEVQTSDAA SSHRTVAEPR IIVQTTSEVD LLDDGYKWRK  720
YGQKVVKGNP YPRSYYKCTS QGCNVRKHVE RAASDPKAVI TTYEGKHNHD VPAARNSSHN  780
TTNNSVPQLR PHNPVVAKQD ATRRTVLRNN EQQPIALLRF KEEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40165773878Probable WRKY transcription factor 4
2lex_A2e-40165773878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111340.0AB711134.1 Nicotiana benthamiana NbWRKY13 mRNA for transcription factor, complete cds.
GenBankAF0962990.0AF096299.1 Nicotiana tabacum DNA-binding protein 2 (WRKY2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619961.10.0PREDICTED: probable WRKY transcription factor 4
RefseqXP_016442380.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9ZQ701e-126WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0P0UVN30.0A0A0P0UVN3_NICBE; Transcription factor
STRINGXP_009619961.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.21e-119WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]