PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00067g01614.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C2H2 | ||||||||
Protein Properties | Length: 490aa MW: 54379.7 Da PI: 8.8303 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.4e-05 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Peaxi162Scf00067g01614.1 87 FVCEICNKGFQRDQNLQLHRRGH 109 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.7 | 4.4e-05 | 163 | 185 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Peaxi162Scf00067g01614.1 163 WKCDKCSKKYAVQSDWKAHQKTC 185 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 86 | 109 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.53E-8 | 86 | 109 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 87 | 109 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 7.8E-5 | 87 | 109 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 98 | 128 | 158 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.6E-5 | 151 | 184 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.53E-8 | 158 | 184 | No hit | No description |
SMART | SM00355 | 94 | 163 | 183 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MSNISGEEGS FSSGNTGEEV QQLHHQAPHF HTSNNNTITT SNGSSSLSQQ QQNKHQPKKK 60 RNLPGTPDPN AEVIALSPTT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTT 120 TEVRKRVYIC PEPTCVHHNP ARALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVQSDWKA 180 HQKTCGTREY KCDCGTIFSR RDSFITHRAF CDALAEENNK VNQGLMNNMD PNLQGGQMHE 240 LMSSNASLGL SEFNNFDPKN PLKSLPQELL PIPFNFNYLQ DGSKNGPAQG QGQLSGSSVP 300 MSATALLQKA AQMGATASSS INSPMMQKSF VTSAMAGHDI IARPTPYVGP SPYENFQTQP 360 DNNNHQPNLA AVMSDMGMYS GILLSNDQNN GGFINNITEH NHEKNSNSVM GRNQKVLGQS 420 GNDDMLTVDF LGVGGSSRPQ NLHEQQQQQR LEAAINQQRM QAAAINNPFH HQQNMTSHGN 480 SPLEKPMWDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-35 | 159 | 228 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 8e-35 | 159 | 228 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 1e-111 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016565721.1 | 0.0 | PREDICTED: protein indeterminate-domain 2-like | ||||
TrEMBL | A0A2G3CTP9 | 0.0 | A0A2G3CTP9_CAPCH; Zinc finger protein MAGPIE | ||||
STRING | XP_009620710.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44160.1 | 2e-99 | C2H2-like zinc finger protein |