PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00064g00626.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

C3H

Protein Properties

Length: 470aa MW: 50700.4 Da PI: 7.1992

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00064g00626.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	9.7e-06	420	442	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f + C+ G +C + H+ Peaxi162Scf00064g00626.1 420 KPCIYFNTSRGCRNGVNCVYLHD 442 69********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.451	416	444	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.9E-4	420	444	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MKVRLFLSED SPSQVGLGAQ DHLQAKISWP LHAGLPVSDD NLPPGFEATQ PESLWKNKLA 60 QIPVIKWTRP PSFVLDIKWR VVAGEESNEM EIQKQREMRM LEAIYPRESA IPPNPSMVPG 120 EETLHNEQHP PIIPITPIEE EEVPDPSFGS MLPSNAVSSK AQVVQSGVPL SNRSVGNNLP 180 VHGISVPGVA PGMAPDVVAA AQAALTALMA DNSQGNLIDH ELLIKILSDP KIVDQLVTQQ 240 GVGTSSHSLP ATSTQSISSA HNMPNQRPQA SSITPRSLAA VSRADPSYIH TGRTDPLPVQ 300 VSRTELAMPT VAGASNGPFH SAPSRIGPIP SLRPRVPEVV SAPLQSVGAP VTTVSTPSSS 360 VPAPVARDMN YYKSLIQQHG GERQETVPQY SNNRNNQHLG SMQESVNSSN IRDSKPKIMK 420 PCIYFNTSRG CRNGVNCVYL HDASSQQRVG SLPDVQSSKR MKMDREITGT

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MKVRLFLSED SPSQVGLGAQ DHLQAKISWP LHAGLPVSDD NLPPGFEATQ PESLWKNKLA  60
QIPVIKWTRP PSFVLDIKWR VVAGEESNEM EIQKQREMRM LEAIYPRESA IPPNPSMVPG  120
EETLHNEQHP PIIPITPIEE EEVPDPSFGS MLPSNAVSSK AQVVQSGVPL SNRSVGNNLP  180
VHGISVPGVA PGMAPDVVAA AQAALTALMA DNSQGNLIDH ELLIKILSDP KIVDQLVTQQ  240
GVGTSSHSLP ATSTQSISSA HNMPNQRPQA SSITPRSLAA VSRADPSYIH TGRTDPLPVQ  300
VSRTELAMPT VAGASNGPFH SAPSRIGPIP SLRPRVPEVV SAPLQSVGAP VTTVSTPSSS  360
VPAPVARDMN YYKSLIQQHG GERQETVPQY SNNRNNQHLG SMQESVNSSN IRDSKPKIMK  420
PCIYFNTSRG CRNGVNCVYL HDASSQQRVG SLPDVQSSKR MKMDREITGT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009595509.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 6 isoform X1
TrEMBL	A0A1S4A2E4	0.0	A0A1S4A2E4_TOBAC; zinc finger CCCH domain-containing protein 6-like isoform X1
STRING	XP_009595509.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5147	7	9