PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00064g00626.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C3H | ||||||||
Protein Properties | Length: 470aa MW: 50700.4 Da PI: 7.1992 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.1 | 9.7e-06 | 420 | 442 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f + C+ G +C + H+ Peaxi162Scf00064g00626.1 420 KPCIYFNTSRGCRNGVNCVYLHD 442 69********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.451 | 416 | 444 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-4 | 420 | 444 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MKVRLFLSED SPSQVGLGAQ DHLQAKISWP LHAGLPVSDD NLPPGFEATQ PESLWKNKLA 60 QIPVIKWTRP PSFVLDIKWR VVAGEESNEM EIQKQREMRM LEAIYPRESA IPPNPSMVPG 120 EETLHNEQHP PIIPITPIEE EEVPDPSFGS MLPSNAVSSK AQVVQSGVPL SNRSVGNNLP 180 VHGISVPGVA PGMAPDVVAA AQAALTALMA DNSQGNLIDH ELLIKILSDP KIVDQLVTQQ 240 GVGTSSHSLP ATSTQSISSA HNMPNQRPQA SSITPRSLAA VSRADPSYIH TGRTDPLPVQ 300 VSRTELAMPT VAGASNGPFH SAPSRIGPIP SLRPRVPEVV SAPLQSVGAP VTTVSTPSSS 360 VPAPVARDMN YYKSLIQQHG GERQETVPQY SNNRNNQHLG SMQESVNSSN IRDSKPKIMK 420 PCIYFNTSRG CRNGVNCVYL HDASSQQRVG SLPDVQSSKR MKMDREITGT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009595509.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 6 isoform X1 | ||||
TrEMBL | A0A1S4A2E4 | 0.0 | A0A1S4A2E4_TOBAC; zinc finger CCCH domain-containing protein 6-like isoform X1 | ||||
STRING | XP_009595509.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5147 | 7 | 9 |