PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00057g00055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 229aa MW: 26533 Da PI: 9.0595 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 22.7 | 3.1e-07 | 78 | 118 | 49 | 90 |
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 e++ r+r e +gC a++k k + +g+wev +++ H+H++ Peaxi162Scf00057g00055.1 78 EERTRKRLEYGCGCMARIKFKIS-NGTWEVCEFDDVHSHPMI 118 45667777778888888888877.***************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-4 | 78 | 118 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEDLNIEKDL ADQEDHTVKD QDFSIRVHNV YNINKDFVFE IDMKFGSEEE SYNAYNTYVV 60 TKGFGVRKGQ CAKFSPYEER TRKRLEYGCG CMARIKFKIS NGTWEVCEFD DVHSHPMIEE 120 NLRHFILSGR KLTTANDVDS EEVARKYLYQ AKVDITKLQS KLYAQDCDKN MHKFGSTVDP 180 QGSKDLILDP IKKKRKGNGY GRLKPNIEKR RKSASQKASK DKIGLSHKQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 193 | 211 | KRKGNGYGRLKPNIEKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 5e-47 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019266793.1 | 3e-49 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A2G2WJP3 | 1e-52 | A0A2G2WJP3_CAPBA; Uncharacterized protein | ||||
TrEMBL | A0A2G3C727 | 1e-52 | A0A2G3C727_CAPCH; Uncharacterized protein | ||||
STRING | XP_009628526.1 | 1e-46 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1726 | 9 | 31 |