PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00017g02115.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bHLH

Protein Properties

Length: 285aa MW: 30597 Da PI: 6.0642

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00017g02115.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	9.7e-11	168	215	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Peaxi162Scf00017g02115.1 168 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 215 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.02E-10	162	219	No hit	No description
SuperFamily	SSF47459	4.45E-18	162	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	164	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-18	164	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-8	168	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	170	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDPPIINESS FSAANPSSYT LAEIWPFSTA ATGGGNGDLA GGSGGLGLRM SSFTGLLEAA 60 ANSVDESTLT ERSRRSGGGG GGLGKRRDVN LEDECSKHVS TSDANDLQDG SMAKRLKSSE 120 FKEENSASKV EAESSSRTGA KGTEQSSKPE PPKDYIHVRA RRGQATDSHS LAERARREKI 180 SERMKILQDL VPGCNKVIGK ALVLDEIINY IQSLQRQVEF LSMKLEAVNS RMNHPIETFP 240 SKDLAPSAFD ATGMIFGAQP PREYAQGAQA EWLHMQVGGS FDRAT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016563548.1	1e-168	PREDICTED: transcription factor bHLH79
Swissprot	Q9LV17	7e-85	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A1U8G4D0	1e-166	A0A1U8G4D0_CAPAN; transcription factor bHLH79
TrEMBL	A0A2G3AW72	1e-166	A0A2G3AW72_CAPCH; Transcription factor bHLH79
STRING	XP_009631983.1	1e-162	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	2e-82	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]