PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00016g02929.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 188aa MW: 20756 Da PI: 10.6715 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.1 | 3.5e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+ l+ +v ++G+g W+tI + R+ ++k++w+++ Peaxi162Scf00016g02929.1 5 KQKWTPEEEAALKAGVLKHGPGKWRTILKDPEfigvlYMRSNVDLKDKWRNL 56 79****************************99999**99***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.506 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.46E-16 | 2 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-14 | 4 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-9 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.03E-19 | 6 | 56 | No hit | No description |
SuperFamily | SSF46785 | 5.33E-15 | 117 | 179 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 4.6E-13 | 117 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 3.6E-14 | 118 | 179 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 20.619 | 119 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 8.7E-9 | 124 | 179 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MGAPKQKWTP EEEAALKAGV LKHGPGKWRT ILKDPEFIGV LYMRSNVDLK DKWRNLSVMA 60 SGWGSREKAR LALKRMNQAR KQDESSLAVS VAQSDGEVAE ARLATTSSGS PQIGGSKRSI 120 IRLDNLIMEA ISNLKEPGGS NKTTIASYIE DQYWAPPNFK RLLSAKLKYL AASGRLIKVI 180 SVLQFTLQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233135 | 2e-55 | AC233135.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-92h13 map 1, complete sequence. | |||
GenBank | HG975440 | 2e-55 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 2e-55 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016501292.1 | 1e-115 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Refseq | XP_016501293.1 | 1e-115 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Swissprot | Q8VWK4 | 6e-83 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A1S4CJC8 | 1e-113 | A0A1S4CJC8_TOBAC; telomere repeat-binding factor 1-like | ||||
STRING | XP_009758805.1 | 1e-114 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2864 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 3e-77 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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