PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00014g01814.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 551aa    MW: 63460.8 Da    PI: 9.0146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00014g01814.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08166211555
                               HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                +++ r+RR++i ++ +eL +l+P         +++ ae+L+ + +YIk Lq
  Peaxi162Scf00014g01814.1 166 QSIAARQRRKKITEKTQELGKLIPGgH------RMNTAEMLQATFKYIKFLQ 211
                               57888*******************955......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.38E-9159213No hitNo description
SuperFamilySSF474591.57E-11159219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-11160214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.23161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-6166211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-9167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF080791.5E-26317388IPR012988Ribosomal protein L30, N-terminal
TIGRFAMsTIGR013105.0E-99318551IPR005998Ribosomal protein L7, eukaryotic
CDDcd016574.26E-92392551No hitNo description
SuperFamilySSF551291.12E-58392551IPR016082Ribosomal protein L30, ferredoxin-like fold domain
PfamPF003273.0E-21393443IPR016082Ribosomal protein L30, ferredoxin-like fold domain
Gene3DG3DSA:3.30.1390.209.9E-36393448IPR016082Ribosomal protein L30, ferredoxin-like fold domain
PROSITE patternPS006340411443IPR018038Ribosomal protein L30, conserved site
Gene3DG3DSA:3.30.1390.209.9E-36512551IPR016082Ribosomal protein L30, ferredoxin-like fold domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MSMASLSYYS TSNFEANIHQ QELNSDMTML TPEQLLLDFN YDTFPNQETC YFDPFFDINE  60
YLLPVETNCN ASFVPEIQDN DFQSYPKRQK VFQDNYQYPR DILTTPPTQG LFNGQFVPNN  120
PPMFQDFSSF SLPEIPLPPV FSSGWCNSAH EVPHVKKGNE KKMSAQSIAA RQRRKKITEK  180
TQELGKLIPG GHRMNTAEML QATFKYIKFL QAQAGLLEFM GSYQENGESF QTGDLHKLVG  240
SSLIQEKLYS SDKCLVPKMF IEALESNNEN QHSQGLEVAM ISSSTIYYFL SFNALTYHVI  300
PHCYVTEMGE EVKAVPVPES VLKKQKRSEE WALAKKQELE AAKKKSSENR KLIYNRAKQY  360
AKEYEQQEKE LVQLKREARL KGGFYVDPEA KLLFIIRIRG INAMPPQTKK ILQLLRLRQI  420
FNGVFLKVNK ATVNMLHRVE PYVTYGYPNL KSIRELIYKR GYGKVDKQRI ALTDNAVIEQ  480
VLGKHGIICM EDLVHEIMTV GPHFKEANNF LWPFQLKAPL GGLKKKRNHY VEGGDAGNRE  540
NYINALIRRM N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_Le1e-1373085511244Ribosomal protein L7
4v7e_CF1e-137308551124460S ribosomal protein L30
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGSolyc08g075090.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-25bHLH family protein