PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00012g03212.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C3H | ||||||||
Protein Properties | Length: 432aa MW: 48800.2 Da PI: 7.5376 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.4 | 2.2e-07 | 7 | 31 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC f++ G C++ +C+FaHg Peaxi162Scf00012g03212.1 7 YKTKLCVLFQQRGRCPR-QSCSFAHG 31 9****************.*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.972 | 6 | 33 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0027 | 6 | 32 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-11 | 6 | 37 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 6 | 36 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-4 | 7 | 31 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MGERKLYKTK LCVLFQQRGR CPRQSCSFAH GNAELRRFSD DSVPVRILSS IIGINKWVQF 60 AVKTRVLIAG RRDFRGRDLR EKLDRRRSPV GRYTDDRDAR ERNASHGRSP TESVGRRSDR 120 KRRMEHQSDG QSDISGNLNM SDGTGDHVKD KRYLSSNSRD VLQQRQLQSE IDMLDEQKQD 180 LESDLEETTR QADSLALKNQ ELEIEISKEK DECKRSEAQL QKLASKLSSD LVRIGENGED 240 SAISVSDEGM AGNHFNTLVE QQKNTSPNKK RPRIHREAGE NPNEVSTKGR GNASRRIAYP 300 TQLNNEKKDR AEFNRENGYK TLLGEEKSKK RNFSSDMIFA NKPKASDNAV VLPSTSMAAH 360 AADEDVEVVE TEENLEVAAN ATRRAGKGTP SGIPEYPFLP PPPPLPQGAY LQKYKCDDED 420 LLDEEAVEVD IV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630378.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 | ||||
TrEMBL | A0A1J6ICJ5 | 0.0 | A0A1J6ICJ5_NICAT; Zinc finger ccch domain-containing protein 13 | ||||
STRING | XP_009630376.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6123 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 1e-27 | C3H family protein |