PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00012g00295.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 440aa MW: 49486.5 Da PI: 5.2909 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 290.2 | 5.6e-89 | 43 | 430 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.. 83 l++lLl+cA a++++d +laq++++ l++ as+ gdp+qRl++ f++AL +r +r +++ ++ s+ + + +++++l Peaxi162Scf00012g00295.1 43 LEKLLLHCASALENNDVTLAQQVMWVLNNVASSMGDPNQRLTSWFLRALISRATRVCPTAMNFHGGSNIE----RRLMSVTELag 123 5799***************************************************777777655555444....33333344456 PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerL 165 ++++ P+++f++ + N+aI++a+eg +vHi+D++i++++QWp+L++aLa+Rpegpp+lRi + + ++ + ++ee+g+rL Peaxi162Scf00012g00295.1 124 YVDLIPWHRFGFCASNSAIYKAIEGRAMVHILDLSITHCMQWPTLIDALAKRPEGPPTLRISVPSWRPQVpplLNVSIEEVGQRL 208 **************************************************************98875555889999********* PP GRAS 166 akfAeelgvpfefnvl...........vak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvksls 235 ++fA+ +vpfef+vl + + l++l ++L++k +E+l+Vn++ l +l++e+ ++ +rd +L+ +k+l+ Peaxi162Scf00012g00295.1 209 TNFAKFRDVPFEFQVLenllpessstfHYDiLLSQLCSSSLQCKDDEVLVVNCQNWLRYLPNEQNGNPHdlsCRDIFLDKIKELN 293 ****************9999987776644446677788999********************999888777779************ PP GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320 P ++ vv++++d++++s+ r++ +++y + fd+le+ lp++s +r +E+ +g++i+n++a eg++r+er e+ + +r++ Peaxi162Scf00012g00295.1 294 PCILAVVDEDSDLGTSSLTSRITTCFNYLWIHFDALETFLPKDSGQRLDYEAD-IGQKIENLIAFEGNQRIERLESGINFTQRMK 377 *****************************************************.******************************* PP GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++GF ++p+ e++ +++k+ll +++ g+ +++ ++ lvl+Wk+++ v ++aW+ Peaxi162Scf00012g00295.1 378 NCGFLSIPFCEETITEVKSLLDEHA-SGWGMKKADDMLVLTWKGHNSVYATAWE 430 *************************.899************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.911 | 17 | 411 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-86 | 43 | 430 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MKTELRGNST TISLQNPTLF NNPQSSLAGA LKGCIGSLDG ACLEKLLLHC ASALENNDVT 60 LAQQVMWVLN NVASSMGDPN QRLTSWFLRA LISRATRVCP TAMNFHGGSN IERRLMSVTE 120 LAGYVDLIPW HRFGFCASNS AIYKAIEGRA MVHILDLSIT HCMQWPTLID ALAKRPEGPP 180 TLRISVPSWR PQVPPLLNVS IEEVGQRLTN FAKFRDVPFE FQVLENLLPE SSSTFHYDIL 240 LSQLCSSSLQ CKDDEVLVVN CQNWLRYLPN EQNGNPHDLS CRDIFLDKIK ELNPCILAVV 300 DEDSDLGTSS LTSRITTCFN YLWIHFDALE TFLPKDSGQR LDYEADIGQK IENLIAFEGN 360 QRIERLESGI NFTQRMKNCG FLSIPFCEET ITEVKSLLDE HASGWGMKKA DDMLVLTWKG 420 HNSVYATAWE LSSMRDKFTN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 5e-57 | 16 | 429 | 65 | 472 | Protein SHORT-ROOT |
5b3h_B | 2e-57 | 16 | 429 | 11 | 418 | Protein SHORT-ROOT |
5b3h_E | 2e-57 | 16 | 429 | 11 | 418 | Protein SHORT-ROOT |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631267.1 | 0.0 | PREDICTED: scarecrow-like protein 32 | ||||
Refseq | XP_016470348.1 | 0.0 | PREDICTED: scarecrow-like protein 32, partial | ||||
TrEMBL | A0A1S4A132 | 0.0 | A0A1S4A132_TOBAC; scarecrow-like protein 32 | ||||
STRING | XP_009631267.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10303 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-121 | GRAS family protein |