PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00008g02313.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 249aa    MW: 27685.6 Da    PI: 4.7472
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00008g02313.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.71.1e-09108187391
                      FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 
                               Y+ +Ak  G  + +s+skk+k +g +   +++C + gk ++ +++          ++++C ak++ ++++ + +w v++++ +Hn
  Peaxi162Scf00008g02313.1 108 YKVHAKLKGLCILRSSSKKHKISGVCNYIHYCCHRIGKCDNATTT----------KKIQCPAKVNANLTTdRITWAVNSVNINHN 182
                               999**********************************99987666..........9*************98899*********** PP

                      FAR1  87 Helap 91 
                               H+l p
  Peaxi162Scf00008g02313.1 183 HDLEP 187
                               **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.8E-7108187IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
METDENESDV NALILREAFN RLFDGDDDDN LLNKGGGDEK IEGTSVNGNE AEDVEGFDEE  60
VEGSDEDVVG GNEDVQGGDV EGGDEDVEGG DVDIEYRCNV RLGPQSGYKV HAKLKGLCIL  120
RSSSKKHKIS GVCNYIHYCC HRIGKCDNAT TTKKIQCPAK VNANLTTDRI TWAVNSVNIN  180
HNHDLEPDLS RLMPGHRHIS KISIRWSRKL RLFAGGLQNF INNSRKLNLE PGDAELIRHF  240
FLRYANEGE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.11e-07FAR1-related sequence 4