PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00007g01020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 724aa MW: 79848.3 Da PI: 5.5035 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 52 | 107 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+ qVk+WFqN+R++ k Peaxi162Scf00007g01020.1 52 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRQLGLEPLQVKFWFQNKRTQTK 107 678899***********************************************998 PP | |||||||
2 | START | 190.7 | 7.4e-60 | 242 | 462 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetl 76 ela +a++el+++a +ep+W s +n+de+ ++f+++ + +++ea+++++vv+m++ +lve+++d++ W+ ++ Peaxi162Scf00007g01020.1 242 ELAVAAMEELIQMANMGEPLWLPSIdsgtYFLNEDEYARIFPRGIGpkpdgFKTEASKETAVVIMNHINLVEIFMDVN-HWSSMF 325 57899********************8877789***********999********************************.****** PP S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSE CS START 77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpS 150 ka tl+v+s+g galq+++ae+q++sp p Rd +fvRy++++ +g w+ivdv +d+ + +p+ +R++++pS Peaxi162Scf00007g01020.1 326 SnivsKAVTLDVLSTGvagnfnGALQVIFAEFQVPSPQIPtRDCYFVRYCKRSVDGIWAIVDVTLDHLRGNPT----ARCRRRPS 406 ************************************************************************6....******** PP EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 g+li++++ng+skv w+eh+d ++ +h ++++lv++gla+gak+w+a l+rqce+ Peaxi162Scf00007g01020.1 407 GCLIQEMPNGYSKVAWIEHIDADDTAIHDIYKPLVNYGLAFGAKRWLAILDRQCER 462 ******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 36 | 103 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.61E-19 | 40 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.584 | 49 | 109 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-18 | 50 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.45E-18 | 52 | 110 | No hit | No description |
Pfam | PF00046 | 2.5E-17 | 52 | 107 | IPR001356 | Homeobox domain |
SuperFamily | SSF55961 | 5.08E-34 | 233 | 464 | No hit | No description |
PROSITE profile | PS50848 | 42.001 | 233 | 465 | IPR002913 | START domain |
CDD | cd08875 | 3.57E-121 | 237 | 461 | No hit | No description |
SMART | SM00234 | 2.2E-55 | 242 | 462 | IPR002913 | START domain |
Pfam | PF01852 | 3.5E-49 | 243 | 462 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.8E-4 | 338 | 429 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.12E-22 | 482 | 714 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MEGQHHSMDM ASYTSESEFM LDQELDSKSG SDNQEGKSGD DEQVDANQRA KKKRYHRHTQ 60 HQIQEMEAFF KECPHPDDKQ RKELGRQLGL EPLQVKFWFQ NKRTQTKNHH EHNENALLRA 120 ENEKFKAENV QLREALNNAA LCPTCRCPTN NLGEMSFAEH SLKLENDRLT EEVHRISAIA 180 AKFVGKPVSS FNLYSPPVTP RPFDIGVQPY SAQHNVIGDE YGNGGERIIS GPTEAEKPFI 240 IELAVAAMEE LIQMANMGEP LWLPSIDSGT YFLNEDEYAR IFPRGIGPKP DGFKTEASKE 300 TAVVIMNHIN LVEIFMDVNH WSSMFSNIVS KAVTLDVLST GVAGNFNGAL QVIFAEFQVP 360 SPQIPTRDCY FVRYCKRSVD GIWAIVDVTL DHLRGNPTAR CRRRPSGCLI QEMPNGYSKV 420 AWIEHIDADD TAIHDIYKPL VNYGLAFGAK RWLAILDRQC ERLASAMATI IPNNDISNMV 480 ISTQEARKST LKLAERMVIS FCSGASATTA HQWTTLSGSG LDSDVRIMTR KSIDDPGKPS 540 GIVLSAATSF WLPICPERVF NFLRDENTRS KWDILSNGGI VQEMAHIANG RENGNCVSLL 600 RVTSENSSQS NMLILQESST DITGSFVVYA PIDVAAMNIV LGGGEPDYVA LLPSGFAILP 660 DGPPGNSGIT AGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIACTV DRIKASLLPE 720 AHDF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009766038.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like | ||||
Refseq | XP_016447957.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A1S3Y7I3 | 0.0 | A0A1S3Y7I3_TOBAC; homeobox-leucine zipper protein HDG2-like | ||||
TrEMBL | A0A1U7VI76 | 0.0 | A0A1U7VI76_NICSY; homeobox-leucine zipper protein HDG2-like | ||||
STRING | XP_009766038.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |