PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr041529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRF | ||||||||
Protein Properties | Length: 378aa MW: 42755.2 Da PI: 9.2616 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.1 | 8.8e-25 | 81 | 124 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e Pbr041529.1 81 DPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGKNRSRKPVE 124 79***************************************987 PP | |||||||
2 | QLQ | 56.4 | 8.8e-20 | 11 | 45 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT++Q+q+L++Q+l+yKy++++ +Pp+Ll+ ++ Pbr041529.1 11 PFTPSQWQELEHQALIYKYMVSGISIPPDLLFSLK 45 8******************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.1E-11 | 10 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.91 | 11 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.9E-14 | 11 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.156 | 81 | 125 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.7E-21 | 82 | 124 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MNSTGRNSRF PFTPSQWQEL EHQALIYKYM VSGISIPPDL LFSLKRSTYN LDSPLPPKLF 60 SHHPPQIGWN CFQMGLGRKI DPEPGRCRRT DGKKWRCSKE AFPDSKYCER HMHRGKNRSR 120 KPVEVLKTSQ ISTTNSSNTS TITTRINTSS ASPSPAAFHS LSSSLPSLSS SDSHAFPFFY 180 HHNPTSPRPT GIGFPHQERS TTSLFLDSGS YPQPSSDYRN RYAYGMKEEV DEHAFFSEPS 240 GTVRGFSGSS SMDDSWQFTP LTISTSSSSK QRSCSAFQSD QQLQSIKHQK QDHQQQQQQH 300 YYALDSNEGS QKTIHRFFDE WPPKDKDSWL DLDDKSSNSG SVSTTRLSIS IPTSAHDFPI 360 FTSRHHNSKP TSNCIYF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr041529.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC770070 | 2e-53 | KC770070.1 Pyrus pyrifolia microsatellite TXY185 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009361693.1 | 0.0 | PREDICTED: growth-regulating factor 1-like isoform X1 | ||||
TrEMBL | A0A498HVV5 | 0.0 | A0A498HVV5_MALDO; Uncharacterized protein | ||||
TrEMBL | A0A498KD98 | 0.0 | A0A498KD98_MALDO; Uncharacterized protein | ||||
STRING | XP_009361693.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4043 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-54 | growth-regulating factor 5 |