PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr041150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRAS | ||||||||
Protein Properties | Length: 259aa MW: 29773.1 Da PI: 7.9055 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 268.4 | 2.4e-82 | 1 | 257 | 120 | 373 |
GRAS 120 sqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvl 208 ++G+QWp+L+qaL +R+ ++pp+lRiT+ g+ + + l +tgerL +fA++lg+ f+f++l +++ + +++++L ++++E+laVn+vl Pbr041150.1 1 MHGVQWPPLMQALVERSynsplHPPPTLRITATGR----DLTLLLRTGERLLRFAQSLGLAFQFHPLvlnnTSQPSDLISPSTLGLHQNEVLAVNCVL 94 58***************87777779**********....9***************************555444456778******************* PP GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306 lh+l+ ++ +L+ +ksl+Pkv++++++ea+hn++ F++rf+eal++y a+fdslea+lp++s+er +vE+ +grei++vv eg++r+ Pbr041150.1 95 YLHTLVTDDSRD---LFLFLQKIKSLNPKVFTIANKEANHNNHLFFNRFVEALDHYGAVFDSLEATLPPNSRERLVVEEW-FGREIKDVVGIEGEKRK 188 *****9444433...4589***********************************************************97.***************** PP GRAS 307 erhetlek.WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +rhe++e+ W+ l++aGF++vpls +a +qaklllr ++ s+gy++ ++s++lgW++rpL+svS+W Pbr041150.1 189 QRHESYETfWEVVLRRAGFENVPLSPFALSQAKLLLRLHYpSEGYQLRIFNDSFFLGWQNRPLFSVSSW 257 *****9977************************************************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 8.1E-80 | 1 | 257 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 36.472 | 1 | 237 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MHGVQWPPLM QALVERSYNS PLHPPPTLRI TATGRDLTLL LRTGERLLRF AQSLGLAFQF 60 HPLVLNNTSQ PSDLISPSTL GLHQNEVLAV NCVLYLHTLV TDDSRDLFLF LQKIKSLNPK 120 VFTIANKEAN HNNHLFFNRF VEALDHYGAV FDSLEATLPP NSRERLVVEE WFGREIKDVV 180 GIEGEKRKQR HESYETFWEV VLRRAGFENV PLSPFALSQA KLLLRLHYPS EGYQLRIFND 240 SFFLGWQNRP LFSVSSWH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 7e-36 | 1 | 257 | 137 | 377 | Protein SCARECROW |
5b3h_D | 7e-36 | 1 | 257 | 137 | 377 | Protein SCARECROW |
5hyz_A | 5e-36 | 1 | 258 | 119 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr041150.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC307959 | 0.0 | KC307959.1 Malus x domestica lateral suppressor protein (LAS1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009374432.2 | 0.0 | PREDICTED: scarecrow-like protein 18 | ||||
Refseq | XP_018500733.1 | 0.0 | PREDICTED: scarecrow-like protein 18 | ||||
Swissprot | Q9ZWC5 | 3e-97 | SCL18_ARATH; Scarecrow-like protein 18 | ||||
TrEMBL | A0A498INV5 | 0.0 | A0A498INV5_MALDO; Uncharacterized protein | ||||
STRING | XP_009346546.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009374432.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12926 | 21 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 5e-88 | GRAS family protein |
Publications ? help Back to Top | |||
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