PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr040949.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 166aa MW: 17977.6 Da PI: 8.2834 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.6 | 9e-43 | 46 | 145 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGa+n++k+l++lpe++r da+ss++yeA ar+rdPvyG++g i +lq+q+++l+a+la+++ Pbr040949.1 46 PCAACKILRRRCAEKCVLAPYFPPSEPVKFTIAHRVFGANNIIKFLQELPESQRADAVSSMLYEASARIRDPVYGCAGAICHLQKQVNELQAQLAKAQ 143 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Pbr040949.1 144 AE 145 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.002 | 45 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-42 | 46 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MECSTETMNT NYTTTSSTMS QSPPSSSPSS PPTPTPTPSP PVVIRPCAAC KILRRRCAEK 60 CVLAPYFPPS EPVKFTIAHR VFGANNIIKF LQELPESQRA DAVSSMLYEA SARIRDPVYG 120 CAGAICHLQK QVNELQAQLA KAQAELVDMQ RQQANHVVLI SSTIT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-43 | 38 | 147 | 3 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-43 | 38 | 147 | 3 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr040949.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008370637.1 | 8e-83 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 6e-69 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A498IKK6 | 2e-81 | A0A498IKK6_MALDO; Uncharacterized protein | ||||
STRING | XP_008370637.1 | 3e-82 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-60 | LOB domain-containing protein 1 |