PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040433.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 323aa    MW: 35096.1 Da    PI: 7.3124
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040433.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00075124146123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  Pbr040433.1 124 YECKTCNRTFPSFQALGGHRASH 146
                  99**********99999998887 PP
2zf-C2H213.10.00028211233123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F++   L  H+r+H
  Pbr040433.1 211 HECSICGSEFTSGQALGGHMRRH 233
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.9E-13123148IPR007087Zinc finger, C2H2
SuperFamilySSF576678.88E-9123146No hitNo description
SMARTSM003550.052124146IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.658124151IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SuperFamilySSF576678.88E-9206233No hitNo description
PfamPF139123.8E-11211234IPR007087Zinc finger, C2H2
SMARTSM003550.019211233IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868211238IPR007087Zinc finger, C2H2
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEGQEELLVT NDQASQMIMI KGRRTKRQRP QSPNGVVTVA VTSSSSSACG AGTIGGGDHD  60
YNYCGNSFTS PTTSGEIYES TEEEEDMANC LILLAQGDHV NPKQTIEERL AQNTNMGKAG  120
FFVYECKTCN RTFPSFQALG GHRASHKKPK SMSSTEEMIK KSPPAAAPPT HHFITATTFE  180
EFEDQSKQLI KYKSSPPPAI PIQVGNKPKI HECSICGSEF TSGQALGGHM RRHRTASAAT  240
NSNTTSGSAT ATHVAVNNSS NNMIGTSTKL QRNVLPLDLN LPAPEDHDHH HHHHHRESKF  300
QFVPTQQATL VFNAPALVDC HY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040433.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372494.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLD9ZIU20.0D9ZIU2_MALDO; C2H2L domain class transcription factor
STRINGXP_009372494.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-53C2H2 family protein