PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038731.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 565aa    MW: 62748.3 Da    PI: 4.7964
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038731.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.22.7e-10159209155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV++++ +gr++A I+d    + ++ +   g f+t+e+Aa+a++  ++kl+g
  Pbr038731.1 159 SHFRGVSRYP-NGRFEAFIWD----NtIQENKKTGGFDTEEDAARAHDLLALKLWG 209
                  789*******.8*********....5556888899******************998 PP
2AP248.42.4e-15252302154
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                  s y+GV++++++++W A I      g +  k f+lg+f+t+eeAa+a++ a  k +
  Pbr038731.1 252 SIYRGVSRNSNSKKWQAKIGK----G-TgfKGFYLGTFDTEEEAARAYDVALIKTK 302
                  57****************988....3.235********************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.92E-18159217No hitNo description
SuperFamilySSF541715.36E-14159219IPR016177DNA-binding domain
PfamPF008472.8E-5159209IPR001471AP2/ERF domain
PROSITE profilePS5103214.895160217IPR001471AP2/ERF domain
SMARTSM003802.9E-16160223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-13160218IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-15252312IPR016177DNA-binding domain
PfamPF008477.9E-11252299IPR001471AP2/ERF domain
CDDcd000181.15E-17252311No hitNo description
PROSITE profilePS5103216.094253311IPR001471AP2/ERF domain
SMARTSM003806.5E-19253317IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-16253312IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MQSSDNFLFP DHFSSHSSSS ELRSSFLHQM QSDGLSLHLQ SHIFANELDE TFTNFQNKTS  60
DANKYPLQLN TQISTLGNSF DVPTQNTSFF PNDPSLSSLP VESVMGFVGD NNNIKSCVNI  120
SEENSLSNQE ENDSLSGKSP MKRKRRRKTS ERKFSDRSSH FRGVSRYPNG RFEAFIWDNT  180
IQENKKTGGF DTEEDAARAH DLLALKLWGK SAGLNFPLEM YTKDLEEMKN MTYDDYLLRL  240
RRGSASFGKG VSIYRGVSRN SNSKKWQAKI GKGTGFKGFY LGTFDTEEEA ARAYDVALIK  300
TKGTKSVTNF DRSQYDVKRI LESSMIPIGK GASKMLRWSS ADDVLESRRN NIEQKTPMVQ  360
PSPSFEPRSY HTIPPFANNS NANQYVDPFL HAFENTDNFP NFSSSYSLQN TQFPIYPQTI  420
NPTFLPGLAN IDPGPCSIGE SSASQVPEVS LDTMLVEISE NHGSQVVSWD LEAILAEANE  480
SLGSQVLEVS LDESLGNDII NEMIPVTGNV GNENSTIIPG NATNGNVFED FGMEDVSGGS  540
YSSFSSTLEM FLMNFEGSKC NAQN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146KRKRRR
2141147KRKRRRK
3142146RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038731.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028948028.10.0AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A498HYD50.0A0A498HYD5_MALDO; Uncharacterized protein
STRINGXP_008368108.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1650648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.12e-61AP2 family protein