PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038010.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 346aa    MW: 39063.5 Da    PI: 9.1419
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038010.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.71.2e-074796155
          AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                 s y+GV++++++gr++A+++d  ++n  ++      k g  + Aa a++ a++k++g
  Pbr038010.1 47 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQN------KKGR-QAAAHAYDLAALKYWG 96
                 57*******************777765444......4477.**************98 PP
2AP251.32.9e-16139190155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Pbr038010.1 139 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 190
                  89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-1047106IPR016177DNA-binding domain
SMARTSM003804.8E-1548110IPR001471AP2/ERF domain
PROSITE profilePS5103213.74948104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-848105IPR001471AP2/ERF domain
PRINTSPR003673.8E-64960IPR001471AP2/ERF domain
PfamPF008475.3E-12139190IPR001471AP2/ERF domain
CDDcd000182.66E-24139200No hitNo description
SuperFamilySSF541719.81E-18139200IPR016177DNA-binding domain
PROSITE profilePS5103218.334140198IPR001471AP2/ERF domain
SMARTSM003801.2E-24140204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17140199IPR001471AP2/ERF domain
PRINTSPR003673.8E-6180200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAKLSHQNQK LNANNNTNAT AANTTTVTKV KRTRRSVPRD SPPQRSSIYR GVTRHRWTGR  60
YEAHLWDKNC WNESQNKKGR QAAAHAYDLA ALKYWGQDTI LNFPLSTYPK ELKEMEGQSR  120
EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT YATQEEAATA  180
YDMAAIEYRG LNAVTNFDLS RYIKWLKPNG PNNSENSGQP NPTIEAKLPN VVRNPNDQDS  240
GLSFFHNLAY SPAETMTTAQ PRPTTATSAL GLLLQSSKFK EMMEMTTATD LSSQPELSTP  300
QCTFPDDIQT YFDCQESSSY AEGEDVIFSE LNSFMPPMFQ CDFTT*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038010.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028952021.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-116AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A498HNS40.0A0A498HNS4_MALDO; Uncharacterized protein
STRINGXP_009360021.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-103ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]