PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr037206.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

ERF

Protein Properties

Length: 266aa MW: 28973.8 Da PI: 5.8287

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr037206.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.2	7.4e-17	90	139	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r ++ g+Wv+eIr+p++ +kr++lg+f t+e+Aa+a++ a+++l+g Pbr037206.1 90 PRYRGIR-CR-GGKWVSEIREPRK---TKRIWLGTFPTPEMAAAAYDVAALALKG 139 68**9.55.7*****843...5**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.0E-10	90	139	IPR001471	AP2/ERF domain
CDD	cd00018	7.02E-15	90	147	No hit	No description
SuperFamily	SSF54171	7.19E-18	91	148	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.0E-25	91	147	IPR001471	AP2/ERF domain
SMART	SM00380	2.4E-26	91	155	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.126	91	147	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MADPNPNTNT SNIVHQTIDQ STPTDPHLVV SPLDFHPPPP HQVLPHSLLP LQHQTCETIE 60 IPSPSARAPL QVQTLPKPAT MASSSSGKHP RYRGIRCRGG KWVSEIREPR KTKRIWLGTF 120 PTPEMAAAAY DVAALALKGT DVALNFPSLI GSYPVPPSTS ALDIRTAATT AAAALQKNSY 180 SMESPKMGQM QKHEVDDMMM SSTSLASSVG YFMDEEELFQ MPNLLVDMAE GMLVSPPRMN 240 DSLPSDYDDS PGNSDGREGR LWSYY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-13	88	147	11	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr037206.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009344262.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF027-like
Refseq	XP_009377922.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	3e-46	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A498JYS1	1e-122	A0A498JYS1_MALDO; Uncharacterized protein
STRING	XP_009344262.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009377922.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF562	32	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	5e-45	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]