PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037054.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 466aa    MW: 50275.2 Da    PI: 7.2675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037054.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.2e-15273318555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Pbr037054.1 273 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 318
                  9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.1E-18266330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-17273322No hitNo description
Gene3DG3DSA:4.10.280.101.3E-17273326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-13273318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-18274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MSQRVPSWDL DETTTTPPAP RLSSRSHSLH TAPTDVPLLD YEVAELTWEN GEVAMHGLGP  60
PRLLAKPLSM TTKYTTWDKP RASGTLESIV NQATSTALPC PLKPPFDSSS GGGSGAKELV  120
TWFDRHRAVA TPSTTVTMDA LVPCRNQSDD PSSQMIESIS MPGVISGAGM VGCSTRVDSC  180
SGTTGAATHD DDTLLSGKGT SLARVPETPE WSSRSQSVSG SATFGIDSQH VTLDSTKASD  240
YDSGEVGDED DRKKRSTGKS SISTKRSRAA AIHNQSERKR RDKINQRMKT LQKLVPNSSK  300
TDKASMLDEV IEYLKQLQAQ VQMISRMNMP TMMLPMAMQQ LQMSMMAAAP RNMGMGMGIG  360
MGMGMDMNNI GRPGIXXXXX XXXXXXXXXX XXXXXXXXXX XXMPRAASWD GTGGDRLPAA  420
STGVMPDHLS AFLACQSQPM TMDAYSMMAA MYQQFHQPPA SSSKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281ERKRRD
2277282RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037054.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894231e-120KP689423.1 Prunus pseudocerasus isolate Unigene11342 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344081.10.0PREDICTED: transcription factor UNE10
TrEMBLA0A498JF350.0A0A498JF35_MALDO; Uncharacterized protein
STRINGXP_009344081.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-75bHLH family protein