PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr036049.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 306aa MW: 32721.9 Da PI: 8.4099

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr036049.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.9	1.2e-31	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e Pbr036049.1 4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQVAVE 101 6************************************************************************************************* PP DUF260 94 lallkee 100 ++l +++ Pbr036049.1 102 AVLKGQS 108 9998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	2.5E-96	1	285	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	17.2	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MRISCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQVAV EAVLKGQSIT PITSEAAANG 120 HGPPLKAYDI RHVSKDENSA ASNDPQKVKT RYRFKRSAVK PKTNKVGSGS GSGCGSGADE 180 SAKPSWTGCS ADKFNRSMSH ESSLSHQSEA AATVDGDSKE SESMISSETA EAELFFRAEP 240 ESARKRTESV QDGELALELT LGLQPQSRAN HVVPVKKRRI EAGFGGVSPA DDGACKIELG 300 LDYVA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr036049.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009343384.1	0.0	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	1e-107	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A498HFS4	0.0	A0A498HFS4_MALDO; Uncharacterized protein
STRING	XP_009343384.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-99	LOB domain-containing protein 41