PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035225.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 377aa    MW: 41697.1 Da    PI: 9.0081
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035225.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.7e-1565124155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++  e Aa+a++ a++k++g
  Pbr035225.1  65 SRFRGVSRHRWTGRFEAHLWDkLSWNStlkKKgKQVYLGAYDEDESAARAYDLAALKYWG 124
                  789******************888899996448*************************98 PP
2AP254.92.2e-17164215155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa a++ a+ +++g
  Pbr035225.1 164 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEYRG 215
                  89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-1665134IPR016177DNA-binding domain
CDDcd000182.96E-1865134No hitNo description
PfamPF008471.2E-1265124IPR001471AP2/ERF domain
PROSITE profilePS5103219.29666132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-1566133IPR001471AP2/ERF domain
SMARTSM003803.8E-2366138IPR001471AP2/ERF domain
PRINTSPR003672.6E-56778IPR001471AP2/ERF domain
CDDcd000186.41E-23164225No hitNo description
SuperFamilySSF541711.7E-17164225IPR016177DNA-binding domain
PfamPF008476.2E-13164215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-18165224IPR001471AP2/ERF domain
PROSITE profilePS5103218.465165223IPR001471AP2/ERF domain
SMARTSM003804.7E-25165229IPR001471AP2/ERF domain
PRINTSPR003672.6E-5205225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MMVKNEEIAG RRRLSTADPE AQAARCVKRR RRGPPAVGGN SQSQQQLAQK PADQTSAATT  60
VKRSSRFRGV SRHRWTGRFE AHLWDKLSWN STLKKKGKQV YLGAYDEDES AARAYDLAAL  120
KYWGASTFTN FPISDYNNEI EIMQSVTKEE YLASKSSGFS RGVSKYRGVA RHHHNGRWEA  180
RIGRVFGNKY LYLGTYGTQE EAAHAYDIAA IEYRGINAVT NFDLSSYITW LKPRADDVIA  240
TPQVPEAVTK PKNAPFAASS YITTEESPFS LTNPFASDYV HSPRKQEVIG SSKSSSPTAL  300
GLLLQSSVFR ELVQKNSSFS EDDSTDGEEP KNQPQADSDD EFGGIIYNGI GGSPFVSSSN  360
IDGDFTWNNF TSSIFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11031RRRLSTADPEAQAARCVKRRRR
29298LKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035225.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342892.20.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A498J2240.0A0A498J224_MALDO; Uncharacterized protein
STRINGXP_009342892.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-89AP2 family protein