PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr034585.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NF-YB | ||||||||
Protein Properties | Length: 193aa MW: 21763.1 Da PI: 8.4327 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 136.4 | 8.1e-43 | 1 | 84 | 17 | 95 |
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtse.....asdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 mkk+lPan+ki+kdaketvqecvsefisf+tse asdkcqrekrktingddllwa+atlGfedy++plkvyl+kyre ++ Pbr034585.1 1 MKKALPANGKIAKDAKETVQECVSEFISFITSEydvvlASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLTKYREGDT 84 9*******************************9888889*****************************************9665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 2.5E-17 | 1 | 60 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 2.1E-28 | 1 | 108 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.1E-39 | 1 | 98 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 1.2E-17 | 19 | 37 | No hit | No description |
PRINTS | PR00615 | 1.2E-17 | 43 | 61 | No hit | No description |
PRINTS | PR00615 | 1.2E-17 | 62 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MKKALPANGK IAKDAKETVQ ECVSEFISFI TSEYDVVLAS DKCQREKRKT INGDDLLWAM 60 ATLGFEDYID PLKVYLTKYR EGDTKGSGKG GDSSSKKDVQ PSPNPQIARQ GSFSQGGNYS 120 NSQVISCSLF LHTYLFFRIF FSFNQVSLIL IVVQIIDGCP FIANIFPYKL LSFPSIYKQY 180 IYDIFLCRVL FY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_B | 3e-34 | 1 | 81 | 19 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 3e-34 | 1 | 81 | 19 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr034585.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007162719.1 | 1e-72 | hypothetical protein PHAVU_001G174600g | ||||
Refseq | XP_007162720.1 | 4e-72 | hypothetical protein PHAVU_001G174600g, partial | ||||
Swissprot | Q67XJ2 | 1e-59 | NFYBA_ARATH; Nuclear transcription factor Y subunit B-10 | ||||
TrEMBL | A0A1R3HQG8 | 4e-72 | A0A1R3HQG8_COCAP; Transcription factor, CBFA/NFYB, DNA topoisomerase | ||||
STRING | XP_007162720.1 | 1e-71 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2545 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53340.1 | 1e-51 | nuclear factor Y, subunit B10 |
Publications ? help Back to Top | |||
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