PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr034526.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 366aa MW: 40197.6 Da PI: 7.7021 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00088 | 156 | 178 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Pbr034526.1 156 YECKTCNRTFPSFQALGGHRASH 178 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 11 | 0.0013 | 250 | 272 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ F++ L H+r+H Pbr034526.1 250 HECSICSAEFTSGQALGGHMRRH 272 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.48E-8 | 155 | 178 | No hit | No description |
Pfam | PF13912 | 3.4E-13 | 155 | 180 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.637 | 156 | 183 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 156 | 178 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 158 | 178 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.48E-8 | 245 | 272 | No hit | No description |
Pfam | PF13912 | 1.2E-12 | 250 | 274 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.162 | 250 | 277 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.029 | 250 | 272 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 252 | 272 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MEAAGGDHHH EEEVMILGCK EQHYNNINIM KGKRTKRLRP QSPMPFAIPR NSSSPEGGIG 60 GLGGGDGGEN NNDCINSTNL SPTTSAELFQ DSTTSEEEDM ANCLILLAQG QSRAASSSPD 120 HHHQPHKHMT TSSRRFLEAT TTPAGKVAGA AGYYVYECKT CNRTFPSFQA LGGHRASHKK 180 PKANIGDDHK NKHFGIGLLP PSDEDQDTQL FKNNSFDNNK NIMTSSSPLS LHLSNRGLVL 240 SSNKSSSKIH ECSICSAEFT SGQALGGHMR RHRAPTGATN TTLSLTSPPV SVAFESHQQQ 300 QQQQPRLPMK KQKSMLNLDL DLNLPAPSED DHHRETKFVF ASKQQQQEQQ QQERLRTQIL 360 VDCHY* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr034526.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009342463.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
Refseq | XP_009368951.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
Refseq | XP_009368968.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A498KM92 | 0.0 | A0A498KM92_MALDO; Uncharacterized protein | ||||
STRING | XP_009342463.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009368951.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009368968.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 1e-51 | C2H2 family protein |