PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr034526.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 366aa    MW: 40197.6 Da    PI: 7.7021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr034526.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00088156178123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  Pbr034526.1 156 YECKTCNRTFPSFQALGGHRASH 178
                  99**********99999998887 PP
2zf-C2H2110.0013250272123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+  F++   L  H+r+H
  Pbr034526.1 250 HECSICSAEFTSGQALGGHMRRH 272
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.48E-8155178No hitNo description
PfamPF139123.4E-13155180IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.637156183IPR007087Zinc finger, C2H2
SMARTSM003550.052156178IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SuperFamilySSF576672.48E-8245272No hitNo description
PfamPF139121.2E-12250274IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162250277IPR007087Zinc finger, C2H2
SMARTSM003550.029250272IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280252272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEAAGGDHHH EEEVMILGCK EQHYNNINIM KGKRTKRLRP QSPMPFAIPR NSSSPEGGIG  60
GLGGGDGGEN NNDCINSTNL SPTTSAELFQ DSTTSEEEDM ANCLILLAQG QSRAASSSPD  120
HHHQPHKHMT TSSRRFLEAT TTPAGKVAGA AGYYVYECKT CNRTFPSFQA LGGHRASHKK  180
PKANIGDDHK NKHFGIGLLP PSDEDQDTQL FKNNSFDNNK NIMTSSSPLS LHLSNRGLVL  240
SSNKSSSKIH ECSICSAEFT SGQALGGHMR RHRAPTGATN TTLSLTSPPV SVAFESHQQQ  300
QQQQPRLPMK KQKSMLNLDL DLNLPAPSED DHHRETKFVF ASKQQQQEQQ QQERLRTQIL  360
VDCHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr034526.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342463.10.0PREDICTED: zinc finger protein ZAT5-like
RefseqXP_009368951.10.0PREDICTED: zinc finger protein ZAT5-like
RefseqXP_009368968.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A498KM920.0A0A498KM92_MALDO; Uncharacterized protein
STRINGXP_009342463.10.0(Pyrus x bretschneideri)
STRINGXP_009368951.10.0(Pyrus x bretschneideri)
STRINGXP_009368968.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-51C2H2 family protein