PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr032228.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 317aa MW: 36088.1 Da PI: 4.7243 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133 | 2.1e-41 | 15 | 141 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 p+GfrF Pt eelv +yLk k ++++++ ++i+e+d+++++PwdL +++ +++ wy Fs++d ky +++r+nrat g Wk tgk+++++++ +++ Pbr032228.1 15 PVGFRFYPTPEELVGHYLKLKKQDNDFKS-DHIAEFDVCNFDPWDLAARIPSDDMVWYIFSRKDYKYINSTRSNRATPGGHWKITGKERAIKARrSKA 111 89*************************99.89**************99999999**************************************985666 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g k+tL+fy+ +pk++ktdWvmhe+ l Pbr032228.1 112 VIGKKRTLTFYQRCQPKPKKTDWVMHEFYL 141 79*************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-49 | 13 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.739 | 14 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-22 | 15 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MGSNRKTRGG GASDPVGFRF YPTPEELVGH YLKLKKQDND FKSDHIAEFD VCNFDPWDLA 60 ARIPSDDMVW YIFSRKDYKY INSTRSNRAT PGGHWKITGK ERAIKARRSK AVIGKKRTLT 120 FYQRCQPKPK KTDWVMHEFY LIDSEASSNP KLHQNDFVLC RMKKNSDMED TSIGEVELGS 180 YSVSNVEDHA AAIVTPEDYS SSTFLSSGYI ELGDIPHGND NIDDCNAMQS PFGYNNYSYP 240 DKNDISTCDE GEPLGFTMSD FENEVPDPMS QEVCPPREEN LELFFYPPQP EDYTLEPLMN 300 MTVGNVLHDN EFRSPI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-32 | 13 | 165 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-32 | 13 | 165 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-32 | 13 | 165 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-32 | 13 | 165 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-32 | 13 | 165 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-32 | 13 | 165 | 16 | 165 | NAC domain-containing protein 19 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr032228.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009340841.2 | 0.0 | PREDICTED: NAC domain-containing protein 14-like | ||||
TrEMBL | A0A498KJD1 | 0.0 | A0A498KJD1_MALDO; Uncharacterized protein | ||||
TrEMBL | A0A498KME3 | 0.0 | A0A498KME3_MALDO; Uncharacterized protein | ||||
STRING | XP_008360312.1 | 1e-142 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14450 | 5 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.2 | 3e-39 | NAC 014 |