PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr031806.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 265aa    MW: 30245.1 Da    PI: 8.7473
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr031806.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.5e-165497146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg++ +eE++ ++d+++ lG++ W+ Ia++++ gRt++++k++w++
      Pbr031806.1 54 RGSFIPEEEQTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 97
                     78888*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-5526IPR009057Homeodomain-like
PROSITE profilePS500904.507848IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-73660IPR009057Homeodomain-like
SuperFamilySSF466891.38E-1937106IPR009057Homeodomain-like
PROSITE profilePS5129424.61349103IPR017930Myb domain
SMARTSM007171.8E-1353101IPR001005SANT/Myb domain
PfamPF002491.8E-145497IPR001005SANT/Myb domain
CDDcd001678.92E-105996No hitNo description
Gene3DG3DSA:1.10.10.604.1E-206199IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGHRCCGKQK VKRGLWSPEE DEKLSNHPWS WQLEFCPKTC RLRWINYLRP ELKRGSFIPE  60
EEQTIIDVHR ILGNKWAQIA KHLPGRTDNE VKNFWNSCIK KKLMSQGLDP KTHNLLPNSH  120
HQRSASSKVA SSSQLPLLQL HNQQQPIQVP FTKINASPIN VTLRTYQYQD LDQNPSNASW  180
TRVEDRTFND ITRLPHQPST DHSTLINNIP SSSSSSSVNL SVFGLLENSN IWLSGADPFE  240
VPRILLGDQS KGEEVVLQQE KETL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21131037108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr031806.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346072.11e-145transcription factor MYB8-like isoform X1
TrEMBLA0A498JZL51e-143A0A498JZL5_MALDO; Uncharacterized protein
STRINGXP_008346072.11e-144(Malus domestica)
STRINGXP_008371964.11e-144(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.18e-66myb domain protein 67