PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr031372.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 221aa MW: 25376.7 Da PI: 9.9634 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.6e-16 | 54 | 97 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++ +eE++ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ Pbr031372.1 54 RGSFIPEEEQTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 97 78888*****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-5 | 5 | 26 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.507 | 8 | 48 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-8 | 36 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.67E-20 | 37 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.613 | 49 | 103 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-13 | 53 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 54 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.95E-10 | 59 | 96 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-20 | 61 | 99 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MGHRCCGKQK VKRGLWSPEE DEKLSNHPWS WQLEFCPKTC RLRWINYLRP ELKRGSFIPE 60 EEQTIIDVHR ILGNKWAQIA KHLPGRTDNE VKNFWNSCIK KKLMSQGLDP KTHNLLPNSH 120 HQRSASSKVA SSSQLPLLQL HNQQQPIQVP FTKINASPIN VTLRTYQYQD LDQNPSNASW 180 TRVEDRTFND ITRLPHQPST DHSTLINNIP SSSSSSSVNL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-22 | 13 | 103 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr031372.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009340137.1 | 1e-137 | PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB86-like | ||||
TrEMBL | A0A498JZL5 | 1e-114 | A0A498JZL5_MALDO; Uncharacterized protein | ||||
STRING | XP_009340137.1 | 1e-136 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3466 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 4e-66 | myb domain protein 67 |