PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr029703.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRAS | ||||||||
Protein Properties | Length: 491aa MW: 54548.7 Da PI: 6.0286 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 226.5 | 1.2e-69 | 216 | 488 | 100 | 374 |
GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....eg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 a+lea++g+ H+iDfdi+ G+Q+++L+++La+++ ++ pp lRiT+v+++e + e++ ++e+L++fA+el+++f+ +++ ++++e+ Pbr029703.1 216 AALLEALNGSAFFHVIDFDIGLGGQYASLMKELAEKAdvasrNKgnqvPPVLRITAVVPEE--YAVETQLIRENLSQFAQELKIRFQVEFVPVRTFEM 311 699*******************************999766551156679**********66..999*************************9****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseerik 284 +++++ ++ gE++aV l+ + r l ++ ++++ +L ++++sP vvv+v+ e d +++sF + f++ le++s +++sl+a++++ s+ +k Pbr029703.1 312 MSFKAVKFMDGEKTAVLLSPYILRRLCSQ----NNISGFLGDMRRVSPSVVVFVDGEgmGDSGTTSFRRNFVSGLEFFSIMLESLDASVAASSDVVKK 405 ********************999998444....44667*******************65566999********************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E +ll+++i+ +v ++ ++ Wre ++ aG+++++ls++a qa++ll kv+++g++v +++++lvl+W+dr+Lv++SaWr Pbr029703.1 406 IETFLLRPKIKAAVEAAARR-------IPPWREVFQGAGMRAMELSQFADFQAQCLLGKVQVRGFHVAKRQAELVLCWHDRALVATSAWR 488 **************998886.......99************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 23.349 | 95 | 468 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.3E-67 | 216 | 488 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MRVPVSSPHS NNNNQSPKHS TQTNNQSVNF HLGISSLGGY EPTSVLDLRH SPSPVSAEKP 60 SKILAISDVL SHSNHDPVEW EEQVDWDSIM RDLGLHDDNV PNLKNSIPQL NSNDPQISEY 120 LHPQPFDPSQ LVHSDFNINL SEVYSSQNCY DHVINDFHQS GSWNVGVDFI EELIGAADRF 180 DSDELPLAQV ILDRLNNRLR SSSPSKPVGK PLQRAAALLE ALNGSAFFHV IDFDIGLGGQ 240 YASLMKELAE KADVASRNKG NQVPPVLRIT AVVPEEYAVE TQLIRENLSQ FAQELKIRFQ 300 VEFVPVRTFE MMSFKAVKFM DGEKTAVLLS PYILRRLCSQ NNISGFLGDM RRVSPSVVVF 360 VDGEGMGDSG TTSFRRNFVS GLEFFSIMLE SLDASVAASS DVVKKIETFL LRPKIKAAVE 420 AAARRIPPWR EVFQGAGMRA MELSQFADFQ AQCLLGKVQV RGFHVAKRQA ELVLCWHDRA 480 LVATSAWRCS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-15 | 217 | 487 | 119 | 378 | Protein SCARECROW |
5b3h_A | 4e-15 | 217 | 487 | 118 | 377 | Protein SCARECROW |
5b3h_D | 4e-15 | 217 | 487 | 118 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr029703.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009356715.2 | 0.0 | PREDICTED: scarecrow-like protein 15 | ||||
Swissprot | O23210 | 1e-125 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
TrEMBL | A0A498KJF0 | 0.0 | A0A498KJF0_MALDO; Uncharacterized protein | ||||
STRING | XP_008363118.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5959 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36710.1 | 1e-117 | GRAS family protein |
Publications ? help Back to Top | |||
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