PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029646.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 372aa    MW: 41242.2 Da    PI: 7.4073
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029646.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.3e-33210267259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +d ++v++tYeg+Hnh+
  Pbr029646.1 210 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCIVKKRVERSFQDSSIVITTYEGQHNHQ 267
                  8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-34194269IPR003657WRKY domain
SuperFamilySSF1182907.19E-29202269IPR003657WRKY domain
PROSITE profilePS5081131.835204269IPR003657WRKY domain
SMARTSM007741.5E-37209268IPR003657WRKY domain
PfamPF031062.9E-25210267IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MSNEKKNPYQ YDPFDYNHHE IKKSSCPFFN YGTSSLYQNP SHDPQTLNGF GSDHPNSFMS  60
FTDCLHGSLD YNTLSKAFDM SCSSSEVISP PLDHDNNSNK QQAAAAGVGD HSVGTNSTTE  120
NPSTPNYSSI SSSPNEAAGA GAGAVAVAVD HQVLDEDSDH KSKKDKQPKL GSDGDDEDKS  180
KKGNKAKKKE KRKREPRFAF LTKSEVDHLE DGYRWRKYGQ KAVKNSPYPR SYYRCTTQKC  240
IVKKRVERSF QDSSIVITTY EGQHNHQCPA TLRGNLNLNA VGMLSPNSLL ASASLSGSAK  300
FSHEFLAQFL PIDNQLQLQS HQHDHPPSST LYSTLMSPHH HHHNQQQQQL PASDHGLLQD  360
LVPSFSHKQE P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-272022701078Probable WRKY transcription factor 4
2lex_A2e-272022701078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029646.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356615.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A498J4930.0A0A498J493_MALDO; Uncharacterized protein
STRINGXP_009356615.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.14e-48WRKY DNA-binding protein 71