PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029304.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 298aa    MW: 33290 Da    PI: 5.2465
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029304.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32114170258
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                  dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+edp++++itYeg H h
  Pbr029304.1 114 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSSEDPDTLIITYEGLHLH 170
                  8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.473108173IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-30109170IPR003657WRKY domain
SuperFamilySSF1182905.23E-27111170IPR003657WRKY domain
SMARTSM007741.8E-36113172IPR003657WRKY domain
PfamPF031065.2E-26114170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEESMAATWS DWSEEELVRE LLDNDSPLFV LPEEAVQSRA ASVFGKEAIN RFIPNVYSGP  60
TIQDIEAALS VTTGTVQPQE LPNARLSLLE RGLSKVEHKY TLKIKSCGNG IMADDGYKWR  120
KYGQKSIKNS PNPRSYYRCT NPRCSAKKQV ERSSEDPDTL IITYEGLHLH FAYPFFNLNN  180
QAQNSTPPMK KTKKKTSDPQ PEDQEREAQE SPRSVTPDSV PDLPPGPFPD QHQEFVEEER  240
SSQGLLQDMV PFMIRNPKPT SASSNSSCSS YRSSPTSPSS LSWATSYFDV GINHSFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-211121701371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029304.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338626.10.0PREDICTED: probable WRKY transcription factor 49
RefseqXP_009338627.10.0PREDICTED: probable WRKY transcription factor 49
TrEMBLA0A498K4801e-178A0A498K480_MALDO; Uncharacterized protein
STRINGXP_009338626.10.0(Pyrus x bretschneideri)
STRINGXP_009338627.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-50WRKY DNA-binding protein 49