PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr029016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NF-YC | ||||||||
Protein Properties | Length: 223aa MW: 24939.8 Da PI: 10.7579 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 42.7 | 1.3e-13 | 115 | 204 | 10 | 99 |
NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 + +++++k ++P+ r+++i+++++ +is +a l+ ka e f+ ++ s + + +r+++ +a++v++ + +dfl d vp++ Pbr029016.1 115 VADEEEVKAYTFPMERVRRIIRSEDPDLRISNDAVFLINKATEKFLEKFCEESHACCVKDRRKAIAYKHLATVVSKRKRYDFLSDYVPEK 204 5567899***************9777778**********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.01E-18 | 111 | 203 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.0E-17 | 125 | 188 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 5.3E-22 | 126 | 203 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MATPKKDIPP KKTKEVKKPS TKSPLPKKTQ QTKKPTTAKA KTPEKKKPSS AKKSTNINKI 60 TSNGNARESD VEAVPSPRSE SRRGAEQNGG KITKTPTTKS KKGKEKGKRK REGEVADEEE 120 VKAYTFPMER VRRIIRSEDP DLRISNDAVF LINKATEKFL EKFCEESHAC CVKDRRKAIA 180 YKHLATVVSK RKRYDFLSDY VPEKVKAEDA LAKRKLAEAK AG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 192 | RRKAIAYKHLATVVSKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr029016.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009338262.1 | 1e-157 | PREDICTED: uncharacterized protein LOC103930629 | ||||
TrEMBL | A0A498KGE0 | 1e-138 | A0A498KGE0_MALDO; Uncharacterized protein | ||||
STRING | XP_009338262.1 | 1e-156 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 1e-28 | nuclear factor Y, subunit C10 |