PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025597.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 800aa    MW: 88194.3 Da    PI: 6.8102
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025597.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.7e-23164265199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F ++++L +gD v+F   + +++el
  Pbr025597.1 164 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFISQKNLVAGDAVLFL--RGENGEL 258
                  99****************************963.3445679************************************************..4499999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Pbr025597.1 259 RLGIRRA 265
                  ****996 PP
2Auxin_resp120.41.4e-39290371182
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                  +a+a+stks+F+v+Y+Pras++eFv++++k+++++ ++v++G Rfkm+f+ +dsserr+sG+v+g++dldp+rWpnSkWr+L
  Pbr025597.1 290 VANAISTKSMFHVFYSPRASHAEFVIPYQKYVRSIANPVTMGNRFKMRFDRDDSSERRCSGVVTGITDLDPFRWPNSKWRCL 371
                  689******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-44156277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-41157276IPR015300DNA-binding pseudobarrel domain
CDDcd100173.71E-23162264No hitNo description
SMARTSM010193.0E-24164266IPR003340B3 DNA binding domain
PROSITE profilePS5086312.872164266IPR003340B3 DNA binding domain
PfamPF023621.5E-21164265IPR003340B3 DNA binding domain
PfamPF065072.1E-33290371IPR010525Auxin response factor
SuperFamilySSF542779.81E-10667750No hitNo description
PROSITE profilePS5174521.081671755IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MEIDLNHAVR EVEKNAYCNG DCGGVCVYCL SSSTSSSSSN SSSAPVASSI YLELWHACAG  60
PLISLPKKGN VVVYFPQGHL EQVASSSPFS PMEMPTFDLH PQIFCKVVNV QLLANKENDE  120
VYTHVTLLPQ PELVGTNLEG KGLEEVGVDE GDGGSPTKST PHMFCKTLTA SDTSTHGGFS  180
VPRRAAEDCF PPLDYKQQRP SQELVAKDLH GVEWRFRHIY RGQPRRHLLT TGWSIFISQK  240
NLVAGDAVLF LRGENGELRL GIRRAVRPRN GLPDSVVGNQ NSYPSVLSLV ANAISTKSMF  300
HVFYSPRASH AEFVIPYQKY VRSIANPVTM GNRFKMRFDR DDSSERRCSG VVTGITDLDP  360
FRWPNSKWRC LMVRWDEDIG NDHQERVSPW EVDPSVSLPP LSIQSSPRLK KLRTSLQGTP  420
PVHSITAGGA GFKDFEESVK SSKVLQGQEN IGFISPLYGG DTVNRPQDFE MHASAHLSLA  480
SNATQKASID ELMRAHRTPY TGFAESDRFP KVLQGQEICP LRSLTGKANF TLGDWESNNG  540
CAPFNVYQPP KPNYFSLASG SLPNMYFPFG DIHRAGQDPT MCSNATNLAR EKVQINPYSM  600
QMGVARNEVG RPNKPSEHKT QESTSTLPAL VPIPRNPNDK DYNGTVTGCK LFGFSLTGDN  660
PSPNSQSSSK RSCTKVHKQG SLVGRAIDLA KLNGYGDLLT ELERLFGMEG LLRDSDKGWR  720
ILYTDSENDM MVVGDDPWHE FCNVVSKIHI YTQEEVEKMT IGMVSDDTQS CLEQAPVMLE  780
VSKSSSVSQP DASPTAVRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-121363942354Auxin response factor 1
4ldy_B1e-121363942354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025597.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009335048.10.0PREDICTED: auxin response factor 4-like
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A498IP220.0A0A498IP22_MALDO; Auxin response factor
STRINGXP_009335048.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52363252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]