PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025448.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 475aa    MW: 53892 Da    PI: 6.8522
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025448.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.53.7e-2399198186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 
                  +Wt+ +v++Li a+ +++++ ++g              +kk++W++vs++m e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++  ++++
  Pbr025448.2  99 KWTDTMVRLLIMAVFYIGDDASDGPdptgkkkpaggllQKKGKWKSVSRAMIEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQGLLEK 196
                  7*********************9866677788999999**********************************************55999999999999 PP

     trihelix  85 le 86 
                  ++
  Pbr025448.2 197 MD 198
                  97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.6E-2197223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEANGLFSGM LGLEMPLHQN TQNPQNPHHH MHQPQMVAYA PHHDPDNHQN PHQSVKQGHP  60
FAPKSKQIAL SDDDEPGFGA DDNSNGDNKK KISPWQRMKW TDTMVRLLIM AVFYIGDDAS  120
DGPDPTGKKK PAGGLLQKKG KWKSVSRAMI EKGFYVSPQQ CEDKFNDLNK RYKRVNDILG  180
KGTACRVVEN QGLLEKMDLA PKMKEEVRKL MNSKHLFFTE MCAYHNSCGH GTVSGGSNGA  240
HNSPPEVATE PSEIPVWPQP HEQLQQRRCF HSSENAQAVA NSGRSETEGS KVIKGGSEDE  300
DEDYEDDDSD DEVVRGGSKG HMGHGNHEDN DDNDERAPQK VPRKEGCFSG SSSSTQLMQQ  360
LNCEVRVVLQ DVSKTAWEKK QWLKTRMIQL EEQQVSYQHR AFELEKQRLM WIKYSGKKER  420
YMERGKLENE RRRLENERML LVVRGNELEL LELHHQQQQQ NSSNKRSDPS SHTG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025448.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009334880.10.0PREDICTED: uncharacterized protein LOC103927663
TrEMBLA0A498ID160.0A0A498ID16_MALDO; Uncharacterized protein
STRINGXP_009334880.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.18e-76sequence-specific DNA binding transcription factors