PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr025334.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 240aa MW: 26302.8 Da PI: 6.3052 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122 | 3.2e-38 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++C++apyf++eq + +f ++hk+FGasn +kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l++l Pbr025334.1 7 PCGACKFLRRKCVRGCIFAPYFCHEQgATHFSAIHKVFGASNASKLLAHLPVSDRCEAAMTISYEAQARLQDPIYGCVSHIFSLQQQVVSLQAQLDSL 104 7*************************89*******************************************************************999 PP DUF260 98 kee 100 k++ Pbr025334.1 105 KDQ 107 876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.847 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.8E-36 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MTGSGSPCGA CKFLRRKCVR GCIFAPYFCH EQGATHFSAI HKVFGASNAS KLLAHLPVSD 60 RCEAAMTISY EAQARLQDPI YGCVSHIFSL QQQVVSLQAQ LDSLKDQAAQ SFLKGSAVAN 120 PNEKFYGKAP SHTEVHSWFH ELESSSNSFP QFNSNHTNDA GTTSYYENGM MNSNNSVNGS 180 HENSVNIPDE NVSSYGSFEE GTSHSMSSFD VQTNYNKQWG FHDANELQSV AFSYIDQHS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 3 | 103 | 7 | 106 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 3 | 103 | 7 | 106 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr025334.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009354925.1 | 1e-180 | PREDICTED: LOB domain-containing protein 29-like | ||||
Swissprot | Q9M2J7 | 1e-68 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A498JWZ1 | 1e-176 | A0A498JWZ1_MALDO; Uncharacterized protein | ||||
STRING | XP_009354925.1 | 1e-179 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3571 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58190.1 | 7e-60 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
---|---|---|---|
|