PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr025184.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | WRKY | ||||||||
Protein Properties | Length: 333aa MW: 36168.9 Da PI: 10.1464 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.2 | 5.3e-31 | 261 | 318 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d ++++tYegeHnh+ Pbr025184.1 261 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDAAMLVVTYEGEHNHS 318 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.9E-15 | 212 | 257 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 4.8E-32 | 248 | 318 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.572 | 254 | 320 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-26 | 257 | 318 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-37 | 259 | 319 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-26 | 261 | 317 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MAVDFMGYRN TITSSSTSSF SAKLEENAVQ EAASGLESVE KLIRLLSQAQ QNQHQGKYPS 60 TAMDMDCRAV ADVAVSKFKK VISLLGRTRT GHARFRRAPL TLSSGSSSQT QNQSQEILVK 120 HVPLPESTKV YHATPIQQIP PPHHHHHGTV LESTKDSSTT INFSYPPTTS FMSSLTGDSD 180 SKQPMSSSSF QITNLSQVSS AGKPPLSSAS LKRKCSSENL GSGKCGAGSS GRCHCKKRKL 240 RQKRVVRVPA ISLKLADIPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERA 300 LDDAAMLVVT YEGEHNHSLS VAETSNLILE SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 247 | 319 | 2 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr025184.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM859901 | 0.0 | HM859901.1 Malus x domestica WRKY disease resistance protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009367472.1 | 0.0 | PREDICTED: probable WRKY transcription factor 7 | ||||
Swissprot | Q9STX0 | 1e-93 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A498KI84 | 0.0 | A0A498KI84_MALDO; Uncharacterized protein | ||||
TrEMBL | D9ZJF0 | 0.0 | D9ZJF0_MALDO; WRKY domain class transcription factor | ||||
STRING | XP_009367472.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.2 | 3e-75 | WRKY DNA-binding protein 11 |