PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr024793.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 302aa    MW: 32359.7 Da    PI: 9.0161
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr024793.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002107129123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C++ Fs++  L  H++ H
  Pbr024793.1 107 FTCNFCKRDFSTSQALGGHQNAH 129
                  89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-6104134No hitNo description
Gene3DG3DSA:3.30.160.603.6E-4105133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.448107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MNTKMKEKVI IDDSDDEQPK PKQPSPASGS SSSPTQNSRP LLDLKLSNND AGHASGALSS  60
KELILFNPLN QGSSSNPEGL GLLSQHNEPR DENPRGDDGK KPQSRVFTCN FCKRDFSTSQ  120
ALGGHQNAHK QERALAKRHQ GGLGMDHNFF GHSHPYYSPY SSITQHPLYG SYGRSLGIRM  180
DSMIHKPYPW SSSTSGFGRF GHGVGSGGWS SSRPGGLINN FQSSLDRLNL DGLHANTTSS  240
ETLGLPGSIS ASRYVQEIGS ARNFGGSNFG INRPIIGGDV LGREPPKPDT DTSGLDLSLK  300
L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr024793.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009355169.10.0PREDICTED: uncharacterized protein LOC103946239
TrEMBLA0A498JIM91e-153A0A498JIM9_MALDO; Uncharacterized protein
STRINGXP_009355169.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.17e-16C2H2 family protein