PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr023382.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 210aa MW: 23618.4 Da PI: 5.8441 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00034 | 29 | 51 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C++ F++ L H+++H Pbr023382.1 29 FACSFCKREFRSAQALGGHMNVH 51 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.47E-6 | 26 | 55 | No hit | No description |
Pfam | PF13912 | 2.2E-6 | 29 | 52 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.011 | 29 | 56 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 31 | 51 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MLKGSRSVDC INFFEGENLC DNSWTTRNFA CSFCKREFRS AQALGGHMNV HRRDRARLRL 60 LPPTLSSEIC PQNPSPNPSS YFSTSSSSSL SPCHSLFSPS LRTLVSTPSS ASSMDENKKP 120 RYDYSPENHF PDLIPKKGMG GGVDHEAGQI FKGFSQRDDE YFNKIDPEEE NKIIRVDLEL 180 HLDLDLDLDI GLLKDHKEEV DLELRLGHL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr023382.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028965823.1 | 1e-102 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A498IVP9 | 5e-94 | A0A498IVP9_MALDO; Uncharacterized protein | ||||
STRING | XP_009379308.1 | 1e-153 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16963 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 3e-12 | C2H2 family protein |