PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr023110.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 458aa MW: 51921.6 Da PI: 6.4746

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr023110.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	377.2	2e-115	56	456	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaal.............. 81 l++lL++cAe +s+ d+ a++l++ ls ++sp gd+++Rl++yf++AL+ rl+ ++++ +++ +t+ + s+++ Pbr023110.1 56 LRHLLITCAELISHLDFPSANRLISLLSSNSSPFGDSTERLTHYFVKALSYRLNInanYSPTTIGPMTALTTAASASASSS--Snylfppmlleeedd 151 68************************************************98721233344444444444433333333..245899999999999 PP GRAS 82 .........klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetger 164 ++++++P+++fshltaNqaIle+++++ +Hi+Dfdi++G+QWp+L+qaL +R+ ++pp+lRiT+ g+ + + l +tger Pbr023110.1 152 neetlhscyLTLNQITPFIRFSHLTANQAILESIDSShLSIHILDFDIMHGVQWPPLMQALVERSynsplHPPPTLRITATGR----DLTLLLRTGER 245 99999886556********************996789********************87777779******....9****** PP GRAS 165 LakfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258 L +fA++lg+ f+f++l +a+ + +++++L ++++EalaVn+vl lh+l+ ++ +L+ +ksl+Pkv++v+++ea+hn++ F++rf+ Pbr023110.1 246 LFRFAQSLGLAFQFHPLvlnnAARPSDLISPSTLGLHQNEALAVNCVLYLHTLVTDDSRD---LLLFLQKIKSLNPKVFTVANKEANHNNPLFFNRFV 340 *************665445567889********************9444433...458**************************** PP GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek.WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354 eal++y a+f+slea+lp++s+er vE+ +gre+++vv eg++r++rhe++e+ W+ l++aGF++v+ls +a +qaklllr ++ s+gy++ Pbr023110.1 341 EALDHYGAVFESLEATLPPNSRERLAVEEW-FGREVKDVVGVEGEKRKQRHERYETfWEVVLRRAGFENVALSPFALSQAKLLLRLHYpSEGYQLRIL 437 ************************97.*******************977************************************* PP GRAS 355 sgslvlgWkdrpLvsvSaW 373 ++s++lgW++rpL+svS+W Pbr023110.1 438 NDSFFLGWQNRPLFSVSSW 456 ***************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	53.789	30	436	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.9E-113	56	456	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MGSFNSSHIQ QEEKEDHQNH PNNNNISDLQ LYHHHHVSDQ PSLIMSTSPD ISQTHLRHLL 60 ITCAELISHL DFPSANRLIS LLSSNSSPFG DSTERLTHYF VKALSYRLNI NANYSPTTIG 120 PMTALTTAAS ASASSSSNYL FPPMLLEEED DNEETLHSCY LTLNQITPFI RFSHLTANQA 180 ILESIDSSHL SIHILDFDIM HGVQWPPLMQ ALVERSYNSP LHPPPTLRIT ATGRDLTLLL 240 RTGERLFRFA QSLGLAFQFH PLVLNNAARP SDLISPSTLG LHQNEALAVN CVLYLHTLVT 300 DDSRDLLLFL QKIKSLNPKV FTVANKEANH NNPLFFNRFV EALDHYGAVF ESLEATLPPN 360 SRERLAVEEW FGREVKDVVG VEGEKRKQRH ERYETFWEVV LRRAGFENVA LSPFALSQAK 420 LLLRLHYPSE GYQLRILNDS FFLGWQNRPL FSVSSWH*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MGSFNSSHIQ QEEKEDHQNH PNNNNISDLQ LYHHHHVSDQ PSLIMSTSPD ISQTHLRHLL  60
ITCAELISHL DFPSANRLIS LLSSNSSPFG DSTERLTHYF VKALSYRLNI NANYSPTTIG  120
PMTALTTAAS ASASSSSNYL FPPMLLEEED DNEETLHSCY LTLNQITPFI RFSHLTANQA  180
ILESIDSSHL SIHILDFDIM HGVQWPPLMQ ALVERSYNSP LHPPPTLRIT ATGRDLTLLL  240
RTGERLFRFA QSLGLAFQFH PLVLNNAARP SDLISPSTLG LHQNEALAVN CVLYLHTLVT  300
DDSRDLLLFL QKIKSLNPKV FTVANKEANH NNPLFFNRFV EALDHYGAVF ESLEATLPPN  360
SRERLAVEEW FGREVKDVVG VEGEKRKQRH ERYETFWEVV LRRAGFENVA LSPFALSQAK  420
LLLRLHYPSE GYQLRILNDS FFLGWQNRPL FSVSSWH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-57	63	456	26	378	Protein SCARECROW
5b3h_A	3e-57	63	456	25	377	Protein SCARECROW
5b3h_D	3e-57	63	456	25	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr023110.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC307959	0.0	KC307959.1 Malus x domestica lateral suppressor protein (LAS1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009379077.1	0.0	PREDICTED: scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-130	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A498KEZ8	0.0	A0A498KEZ8_MALDO; Uncharacterized protein
STRING	XP_009379077.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12926	21	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-101	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]